Wall clock time and date at job start Mon Mar 30 2020 03:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39894 * 109.47061 * 2 1 4 4 F 1.39904 * 109.46723 * 239.99922 * 2 1 3 5 5 C 1.52995 * 109.47053 * 120.00401 * 2 1 3 6 6 N 1.46905 * 109.46975 * 180.02562 * 5 2 1 7 7 C 1.47854 * 110.99617 * 285.17425 * 6 5 2 8 8 C 1.54909 * 104.89295 * 213.58195 * 7 6 5 9 9 C 1.55436 * 101.52076 * 37.06462 * 8 7 6 10 10 C 1.47444 * 111.00089 * 164.33487 * 6 5 2 11 11 H 1.09001 * 109.88792 * 242.65945 * 10 6 5 12 12 C 1.50700 * 109.88825 * 3.68531 * 10 6 5 13 13 H 1.08000 * 119.99623 * 64.93454 * 12 10 6 14 14 C 1.37874 * 119.99928 * 244.93545 * 12 10 6 15 15 N 1.31519 * 119.99891 * 184.81568 * 14 12 10 16 16 Si 1.86798 * 120.00141 * 4.80930 * 14 12 10 17 17 H 1.48505 * 109.46790 * 84.65121 * 16 14 12 18 18 H 1.48502 * 109.47433 * 204.64902 * 16 14 12 19 19 H 1.48503 * 109.47053 * 324.65471 * 16 14 12 20 20 H 1.09000 * 109.46900 * 299.99816 * 1 2 3 21 21 H 1.08997 * 109.47403 * 59.99915 * 1 2 3 22 22 H 1.08999 * 109.46855 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47650 * 60.00045 * 5 2 1 24 24 H 1.09000 * 109.47090 * 299.99667 * 5 2 1 25 25 H 1.08997 * 110.37347 * 332.46944 * 7 6 5 26 26 H 1.08995 * 110.37173 * 94.69831 * 7 6 5 27 27 H 1.08995 * 110.99066 * 155.21749 * 8 7 6 28 28 H 1.09006 * 110.98671 * 279.03893 * 8 7 6 29 29 H 1.08997 * 110.69161 * 205.97891 * 9 8 7 30 30 H 1.08999 * 110.83967 * 82.82598 * 9 8 7 31 31 H 0.96992 * 120.00049 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2492 6 7 3.5090 -0.7208 1.2494 7 6 4.0394 -1.6935 0.2703 8 6 5.3465 -2.2274 0.9075 9 6 4.9562 -2.2894 2.4108 10 6 4.0373 -1.0617 2.5831 11 1 4.6093 -0.2233 2.9808 12 6 2.9007 -1.3945 3.5150 13 1 2.2856 -2.2623 3.3280 14 6 2.6462 -0.5912 4.6063 15 7 1.7165 -0.9327 5.4716 16 14 3.6220 0.9819 4.8560 17 1 3.0001 2.0797 4.0727 18 1 3.6225 1.3407 6.2970 19 1 5.0191 0.7760 4.3966 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6767 -1.7490 1.2492 24 1 1.6767 -0.2075 2.1392 25 1 3.3297 -2.5073 0.1214 26 1 4.2535 -1.1995 -0.6774 27 1 5.5913 -3.2180 0.5244 28 1 6.1713 -1.5332 0.7464 29 1 5.8403 -2.2007 3.0422 30 1 4.4159 -3.2095 2.6335 31 1 1.5371 -0.3674 6.2391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213337295.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:20 Heat of formation + Delta-G solvation = -122.193302 kcal Electronic energy + Delta-G solvation = -16035.749524 eV Core-core repulsion = 13179.731097 eV Total energy + Delta-G solvation = -2856.018427 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.75717 -47.77283 -39.83562 -34.71657 -34.16646 -31.48236 -30.77727 -26.70661 -26.09215 -22.73283 -21.87567 -20.98185 -19.30152 -18.43901 -17.50527 -17.18145 -16.44579 -16.04515 -15.67100 -14.98292 -14.71821 -14.56666 -14.17781 -14.12745 -13.89645 -13.53851 -13.38485 -13.17864 -12.91982 -12.81103 -12.29417 -12.01391 -11.90767 -11.78478 -11.45014 -11.41915 -11.07816 -10.80694 -9.07876 -8.34857 -6.37555 1.33731 1.38587 1.45619 2.31216 2.86661 2.97392 3.26326 3.48793 3.62692 3.94280 3.99792 4.12224 4.34022 4.49061 4.60847 4.65639 4.80240 4.90952 4.96695 4.99643 5.07733 5.08264 5.18671 5.29617 5.39266 5.54642 6.15903 6.31980 6.39202 6.69333 7.27459 8.79797 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.013790 C = 0.010752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.615589 B = 2029.961299 C = 2603.436738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.282 3.718 3 F -0.212 7.212 4 F -0.210 7.210 5 C 0.040 3.960 6 N -0.545 5.545 7 C 0.044 3.956 8 C -0.121 4.121 9 C -0.128 4.128 10 C 0.151 3.849 11 H 0.049 0.951 12 C -0.519 4.519 13 H 0.040 0.960 14 C 0.031 3.969 15 N -0.934 5.934 16 Si 0.933 3.067 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.251 1.251 20 H 0.090 0.910 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.051 0.949 24 H 0.092 0.908 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 0.762 -10.102 10.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.246 3.754 3 F -0.193 7.193 4 F -0.191 7.191 5 C -0.089 4.089 6 N -0.269 5.269 7 C -0.084 4.084 8 C -0.159 4.159 9 C -0.167 4.167 10 C 0.045 3.955 11 H 0.067 0.933 12 C -0.557 4.557 13 H 0.058 0.942 14 C -0.169 4.169 15 N -0.573 5.573 16 Si 0.759 3.241 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.175 1.175 20 H 0.109 0.891 21 H 0.115 0.885 22 H 0.117 0.883 23 H 0.069 0.931 24 H 0.110 0.890 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.464 1.331 -10.098 10.289 hybrid contribution -0.110 -0.138 0.742 0.763 sum 1.354 1.193 -9.355 9.528 Atomic orbital electron populations 1.22702 0.89249 1.06357 1.05920 1.21677 0.94812 0.75331 0.83603 1.92937 1.91093 1.38382 1.96879 1.92925 1.90941 1.81119 1.54157 1.22928 0.90831 0.99645 0.95507 1.63796 1.06202 1.49067 1.07834 1.23113 0.96085 0.93328 0.95888 1.22758 0.96966 1.01659 0.94525 1.22833 0.98868 0.98517 0.96503 1.20601 0.93809 0.94486 0.86591 0.93333 1.21290 1.14470 1.10856 1.09128 0.94177 1.25761 0.95630 1.00464 0.95092 1.70021 1.34046 1.39541 1.13655 0.85944 0.80812 0.80549 0.76795 1.19638 1.21268 1.17512 0.89098 0.88478 0.88273 0.93085 0.88970 0.94501 0.90601 0.89343 0.90485 0.91468 0.93004 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.91 9.38 71.98 0.68 -4.23 16 2 C 0.28 9.94 2.24 30.59 0.07 10.01 16 3 F -0.21 -8.27 16.98 44.97 0.76 -7.51 16 4 F -0.21 -7.29 14.92 44.97 0.67 -6.62 16 5 C 0.04 1.68 3.44 86.30 0.30 1.98 16 6 N -0.54 -23.30 5.05 -864.86 -4.36 -27.66 16 7 C 0.04 1.57 5.24 86.77 0.45 2.02 16 8 C -0.12 -3.89 7.10 32.08 0.23 -3.66 16 9 C -0.13 -5.03 6.47 31.88 0.21 -4.83 16 10 C 0.15 6.98 3.30 44.51 0.15 7.13 16 11 H 0.05 2.34 4.53 -2.39 -0.01 2.33 16 12 C -0.52 -27.74 5.98 25.60 0.15 -27.58 16 13 H 0.04 2.37 7.70 -2.91 -0.02 2.35 16 14 C 0.03 1.70 5.33 84.65 0.45 2.15 16 15 N -0.93 -55.03 13.96 21.45 0.30 -54.73 16 16 Si 0.93 43.81 27.40 68.60 1.88 45.69 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.25 -11.18 6.19 99.48 0.62 -10.56 16 20 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 21 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 22 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.05 2.14 7.32 -2.39 -0.02 2.12 16 24 H 0.09 4.37 6.49 -2.39 -0.02 4.35 16 25 H 0.04 1.32 7.53 -2.39 -0.02 1.31 16 26 H 0.08 2.60 7.53 -2.39 -0.02 2.58 16 27 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.05 2.13 7.85 -2.39 -0.02 2.11 16 31 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -60.65 253.30 2.95 -57.70 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.02 Total: 10.16 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 2.68 Total: -17.02 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -4.07 Total: -82.40 kcal Atomic # 9 Polarization: -15.56 SS G_CDS: 1.43 Total: -14.13 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -60.65 2.95 -57.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213337295.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.496 kcal (2) G-P(sol) polarization free energy of solvation -60.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds