Wall clock time and date at job start Mon Mar 30 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39900 * 109.46903 * 2 1 4 4 F 1.39897 * 109.46970 * 120.00131 * 2 1 3 5 5 C 1.53002 * 109.47062 * 240.00532 * 2 1 3 6 6 N 1.46904 * 109.47045 * 185.67168 * 5 2 1 7 7 C 1.47899 * 110.99605 * 294.83526 * 6 5 2 8 8 C 1.53994 * 107.05548 * 214.15720 * 7 6 5 9 9 C 1.54592 * 105.14026 * 1.22373 * 8 7 6 10 10 C 1.48529 * 110.99693 * 177.43947 * 6 5 2 11 11 H 1.08997 * 110.67087 * 41.28521 * 10 6 5 12 12 C 1.50697 * 110.66972 * 278.15142 * 10 6 5 13 13 H 1.08001 * 119.99926 * 0.02562 * 12 10 6 14 14 C 1.37875 * 120.00387 * 180.02562 * 12 10 6 15 15 N 1.31515 * 119.99789 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00178 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47232 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46917 * 119.99883 * 16 14 12 19 19 H 1.48497 * 109.47256 * 239.99910 * 16 14 12 20 20 H 1.09002 * 109.47476 * 59.99963 * 1 2 3 21 21 H 1.09006 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47228 * 299.99611 * 1 2 3 23 23 H 1.08996 * 109.46877 * 305.66824 * 5 2 1 24 24 H 1.08997 * 109.47599 * 65.66880 * 5 2 1 25 25 H 1.09000 * 109.91933 * 333.50987 * 7 6 5 26 26 H 1.09001 * 109.91956 * 94.79968 * 7 6 5 27 27 H 1.09005 * 110.30940 * 120.14404 * 8 7 6 28 28 H 1.09004 * 110.30792 * 242.31036 * 8 7 6 29 29 H 1.08999 * 110.72191 * 140.31701 * 9 8 7 30 30 H 1.08997 * 110.72707 * 263.42131 * 9 8 7 31 31 H 0.97000 * 119.99726 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0400 -0.7211 -1.2493 6 7 3.5027 -0.8408 -1.1829 7 6 4.1462 0.4898 -1.2350 8 6 5.4720 0.3207 -1.9998 9 6 5.5197 -1.1717 -2.4002 10 6 4.0289 -1.5912 -2.3516 11 1 3.5149 -1.2911 -3.2647 12 6 3.9014 -3.0765 -2.1314 13 1 3.4712 -3.4515 -1.2145 14 6 4.3338 -3.9569 -3.1005 15 7 4.8580 -3.5003 -4.2168 16 14 4.1749 -5.7980 -2.8277 17 1 3.5565 -6.0504 -1.5014 18 1 3.3203 -6.3840 -3.8914 19 1 5.5211 -6.4232 -2.8739 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.5962 -1.7153 -1.3016 24 1 1.7620 -0.1521 -2.1364 25 1 3.5013 1.1939 -1.7608 26 1 4.3435 0.8468 -0.2241 27 1 5.4789 0.9514 -2.8889 28 1 6.3152 0.5664 -1.3542 29 1 5.9206 -1.2883 -3.4070 30 1 6.1080 -1.7447 -1.6836 31 1 5.1619 -4.1196 -4.8987 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213337346.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:23 Heat of formation + Delta-G solvation = -105.782414 kcal Electronic energy + Delta-G solvation = -15767.016181 eV Core-core repulsion = 12911.709384 eV Total energy + Delta-G solvation = -2855.306798 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.45833 -46.43892 -37.86219 -33.06524 -32.41850 -30.12102 -28.23471 -25.30610 -24.22409 -21.41498 -19.76710 -19.69199 -17.20570 -16.48112 -16.09315 -15.70060 -14.79483 -14.51772 -13.91720 -13.49464 -13.01930 -12.88718 -12.74747 -12.51619 -12.27932 -12.20312 -11.78487 -11.43929 -11.26179 -10.91325 -10.64839 -10.61065 -10.29981 -10.05277 -9.64648 -9.58847 -8.98156 -8.45002 -7.42064 -6.04756 -4.05893 3.29608 3.37828 3.43327 4.14816 4.39375 4.58579 4.69702 4.78803 5.23373 5.28237 5.54394 5.62077 5.73810 5.79408 5.88433 6.05898 6.11503 6.26657 6.39608 6.57998 6.66403 7.01358 7.11077 7.37483 7.49720 7.79491 8.00947 8.11291 8.46716 9.00488 9.58441 11.05253 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.031987 B = 0.010004 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.140856 B = 2798.331185 C = 3383.468555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.288 3.712 3 F -0.208 7.208 4 F -0.193 7.193 5 C 0.016 3.984 6 N -0.511 5.511 7 C 0.036 3.964 8 C -0.138 4.138 9 C -0.100 4.100 10 C 0.205 3.795 11 H 0.014 0.986 12 C -0.499 4.499 13 H 0.065 0.935 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.106 0.894 24 H 0.051 0.949 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 6.753 4.668 10.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.252 3.748 3 F -0.189 7.189 4 F -0.174 7.174 5 C -0.114 4.114 6 N -0.235 5.235 7 C -0.092 4.092 8 C -0.176 4.176 9 C -0.139 4.139 10 C 0.100 3.900 11 H 0.032 0.968 12 C -0.538 4.538 13 H 0.083 0.917 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.210 1.210 20 H 0.103 0.897 21 H 0.108 0.892 22 H 0.095 0.905 23 H 0.124 0.876 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.900 6.435 5.011 10.067 hybrid contribution -0.156 -0.445 -0.621 0.780 sum -6.056 5.990 4.390 9.583 Atomic orbital electron populations 1.22734 0.92396 1.05299 1.04576 1.21268 0.92646 0.75415 0.85485 1.92954 1.90625 1.38394 1.96971 1.92999 1.90599 1.80850 1.52943 1.23098 0.93333 1.01772 0.93179 1.64864 1.01380 1.12041 1.45242 1.22905 0.95497 0.91428 0.99397 1.22515 0.96616 0.99829 0.98667 1.22408 0.99522 0.90984 1.00984 1.20355 0.90743 0.93297 0.85597 0.96800 1.21031 1.40307 0.89557 1.02872 0.91714 1.24952 0.95225 0.98996 0.95024 1.69971 1.41602 1.34500 1.07222 0.86463 0.77742 0.85205 0.78169 1.19621 1.21176 1.21037 0.89675 0.89215 0.90531 0.87600 0.93128 0.94864 0.91768 0.92973 0.92675 0.91097 0.92446 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 9.38 37.16 0.35 -1.93 16 2 C 0.29 4.77 2.14 -26.73 -0.06 4.72 16 3 F -0.21 -3.58 14.46 2.25 0.03 -3.55 16 4 F -0.19 -3.65 16.88 2.25 0.04 -3.61 16 5 C 0.02 0.31 4.35 -3.82 -0.02 0.29 16 6 N -0.51 -11.38 4.81 -223.99 -1.08 -12.46 16 7 C 0.04 0.72 5.09 -2.76 -0.01 0.71 16 8 C -0.14 -2.75 6.93 -25.38 -0.18 -2.92 16 9 C -0.10 -2.39 5.94 -24.87 -0.15 -2.54 16 10 C 0.21 5.18 2.16 -66.94 -0.14 5.04 16 11 H 0.01 0.39 8.02 -51.93 -0.42 -0.03 16 12 C -0.50 -13.68 8.50 -34.44 -0.29 -13.98 16 13 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 14 C 0.06 1.64 5.36 -17.82 -0.10 1.54 16 15 N -0.89 -25.34 12.40 55.43 0.69 -24.65 16 16 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.11 2.03 7.91 -51.93 -0.41 1.62 16 24 H 0.05 0.91 7.95 -51.93 -0.41 0.49 16 25 H 0.03 0.63 7.02 -51.93 -0.36 0.27 16 26 H 0.06 1.26 7.76 -51.93 -0.40 0.86 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.78 7.64 -51.93 -0.40 1.39 16 30 H 0.06 1.43 8.05 -51.93 -0.42 1.01 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 260.44 15.07 3.92 3.92 Total: -1.00 -29.12 260.44 -6.49 -35.62 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.48 Total: -2.44 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.60 Total: -9.07 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.39 Total: -37.11 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.07 Total: -7.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.12 -6.49 -35.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213337346.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.165 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds