Wall clock time and date at job start Mon Mar 30 2020 03:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39900 * 109.46903 * 2 1 4 4 F 1.39897 * 109.46970 * 120.00131 * 2 1 3 5 5 C 1.53002 * 109.47062 * 240.00532 * 2 1 3 6 6 N 1.46904 * 109.47045 * 185.67168 * 5 2 1 7 7 C 1.47899 * 110.99605 * 294.83526 * 6 5 2 8 8 C 1.53994 * 107.05548 * 214.15720 * 7 6 5 9 9 C 1.54592 * 105.14026 * 1.22373 * 8 7 6 10 10 C 1.48529 * 110.99693 * 177.43947 * 6 5 2 11 11 H 1.08997 * 110.67087 * 41.28521 * 10 6 5 12 12 C 1.50697 * 110.66972 * 278.15142 * 10 6 5 13 13 H 1.08001 * 119.99926 * 0.02562 * 12 10 6 14 14 C 1.37875 * 120.00387 * 180.02562 * 12 10 6 15 15 N 1.31515 * 119.99789 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00178 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47232 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46917 * 119.99883 * 16 14 12 19 19 H 1.48497 * 109.47256 * 239.99910 * 16 14 12 20 20 H 1.09002 * 109.47476 * 59.99963 * 1 2 3 21 21 H 1.09006 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47228 * 299.99611 * 1 2 3 23 23 H 1.08996 * 109.46877 * 305.66824 * 5 2 1 24 24 H 1.08997 * 109.47599 * 65.66880 * 5 2 1 25 25 H 1.09000 * 109.91933 * 333.50987 * 7 6 5 26 26 H 1.09001 * 109.91956 * 94.79968 * 7 6 5 27 27 H 1.09005 * 110.30940 * 120.14404 * 8 7 6 28 28 H 1.09004 * 110.30792 * 242.31036 * 8 7 6 29 29 H 1.08999 * 110.72191 * 140.31701 * 9 8 7 30 30 H 1.08997 * 110.72707 * 263.42131 * 9 8 7 31 31 H 0.97000 * 119.99726 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0400 -0.7211 -1.2493 6 7 3.5027 -0.8408 -1.1829 7 6 4.1462 0.4898 -1.2350 8 6 5.4720 0.3207 -1.9998 9 6 5.5197 -1.1717 -2.4002 10 6 4.0289 -1.5912 -2.3516 11 1 3.5149 -1.2911 -3.2647 12 6 3.9014 -3.0765 -2.1314 13 1 3.4712 -3.4515 -1.2145 14 6 4.3338 -3.9569 -3.1005 15 7 4.8580 -3.5003 -4.2168 16 14 4.1749 -5.7980 -2.8277 17 1 3.5565 -6.0504 -1.5014 18 1 3.3203 -6.3840 -3.8914 19 1 5.5211 -6.4232 -2.8739 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.5962 -1.7153 -1.3016 24 1 1.7620 -0.1521 -2.1364 25 1 3.5013 1.1939 -1.7608 26 1 4.3435 0.8468 -0.2241 27 1 5.4789 0.9514 -2.8889 28 1 6.3152 0.5664 -1.3542 29 1 5.9206 -1.2883 -3.4070 30 1 6.1080 -1.7447 -1.6836 31 1 5.1619 -4.1196 -4.8987 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213337346.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:22 Heat of formation + Delta-G solvation = -123.993295 kcal Electronic energy + Delta-G solvation = -15767.805865 eV Core-core repulsion = 12911.709384 eV Total energy + Delta-G solvation = -2856.096481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.81756 -47.81804 -39.61564 -34.86338 -34.10776 -31.52485 -30.15818 -26.80629 -26.16454 -22.79430 -21.61584 -21.38784 -18.71909 -18.31856 -17.57313 -17.12580 -16.58441 -16.30429 -15.64488 -14.88736 -14.73741 -14.28473 -14.16953 -14.06096 -13.70741 -13.35664 -13.24916 -13.10332 -12.94901 -12.73518 -12.56131 -12.32564 -12.04313 -11.83202 -11.42715 -11.27924 -10.96770 -10.53079 -9.18172 -8.14984 -6.23156 1.41037 1.43632 1.55698 2.42052 2.89867 3.12978 3.16922 3.34122 3.54532 3.89236 4.04549 4.13567 4.35427 4.41724 4.59703 4.69295 4.73098 4.84936 4.90716 4.98967 5.02514 5.12658 5.30808 5.48924 5.58061 5.70194 6.08986 6.29506 6.48829 6.87123 7.44856 8.94440 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.031987 B = 0.010004 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.140856 B = 2798.331185 C = 3383.468555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.287 3.713 3 F -0.211 7.211 4 F -0.209 7.209 5 C 0.012 3.988 6 N -0.528 5.528 7 C 0.039 3.961 8 C -0.129 4.129 9 C -0.097 4.097 10 C 0.207 3.793 11 H -0.013 1.013 12 C -0.515 4.515 13 H 0.053 0.947 14 C 0.015 3.985 15 N -0.921 5.921 16 Si 0.959 3.041 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.281 1.281 20 H 0.104 0.896 21 H 0.099 0.901 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 7.172 5.262 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.250 3.750 3 F -0.193 7.193 4 F -0.190 7.190 5 C -0.118 4.118 6 N -0.253 5.253 7 C -0.089 4.089 8 C -0.167 4.167 9 C -0.136 4.136 10 C 0.100 3.900 11 H 0.005 0.995 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.560 5.560 16 Si 0.785 3.215 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.207 1.207 20 H 0.122 0.878 21 H 0.118 0.882 22 H 0.113 0.887 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.759 6.869 5.617 11.154 hybrid contribution 0.113 -0.549 -0.811 0.985 sum -6.646 6.321 4.806 10.355 Atomic orbital electron populations 1.22733 0.88239 1.06628 1.06447 1.21511 0.95285 0.74636 0.83538 1.92944 1.91003 1.38450 1.96874 1.92968 1.91127 1.81263 1.53688 1.23185 0.91375 1.02035 0.95209 1.64759 1.03607 1.13230 1.43678 1.22927 0.95500 0.90564 0.99914 1.22476 0.97500 0.96938 0.99780 1.22223 0.98279 0.93824 0.99298 1.20148 0.91429 0.92790 0.85584 0.99544 1.21233 1.40432 0.91131 1.02524 0.92866 1.25690 0.94842 1.03182 0.94745 1.70073 1.42158 1.35904 1.07865 0.85483 0.77761 0.80061 0.78201 1.19328 1.20360 1.20732 0.87762 0.88211 0.88743 0.88482 0.92157 0.93678 0.91126 0.91330 0.90559 0.93137 0.94237 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.82 9.38 71.98 0.68 -3.14 16 2 C 0.29 8.98 2.14 30.60 0.07 9.04 16 3 F -0.21 -6.82 14.46 44.97 0.65 -6.17 16 4 F -0.21 -7.67 16.88 44.97 0.76 -6.91 16 5 C 0.01 0.43 4.35 86.30 0.38 0.81 16 6 N -0.53 -23.38 4.81 -862.58 -4.15 -27.52 16 7 C 0.04 1.50 5.09 86.45 0.44 1.94 16 8 C -0.13 -4.95 6.93 31.47 0.22 -4.73 16 9 C -0.10 -4.69 5.94 31.80 0.19 -4.50 16 10 C 0.21 10.59 2.16 44.52 0.10 10.69 16 11 H -0.01 -0.73 8.02 -2.39 -0.02 -0.74 16 12 C -0.51 -28.67 8.50 25.60 0.22 -28.45 16 13 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 14 C 0.01 0.80 5.36 84.65 0.45 1.26 16 15 N -0.92 -52.85 12.40 21.45 0.27 -52.58 16 16 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 22 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.10 3.72 7.91 -2.39 -0.02 3.70 16 24 H 0.06 2.10 7.95 -2.39 -0.02 2.08 16 25 H 0.04 1.63 7.02 -2.39 -0.02 1.61 16 26 H 0.07 2.64 7.76 -2.39 -0.02 2.62 16 27 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.05 2.60 7.64 -2.39 -0.02 2.58 16 30 H 0.04 1.99 8.05 -2.39 -0.02 1.97 16 31 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -62.14 260.44 3.38 -58.76 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.10 Total: 5.72 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 2.73 Total: -17.09 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -3.88 Total: -80.11 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 1.41 Total: -13.09 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -62.14 3.38 -58.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213337346.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.236 kcal (2) G-P(sol) polarization free energy of solvation -62.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds