Wall clock time and date at job start Mon Mar 30 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39905 * 109.47115 * 2 1 4 4 F 1.39900 * 109.47126 * 240.00346 * 2 1 3 5 5 C 1.52997 * 109.47482 * 120.00260 * 2 1 3 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 2 1 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 2 8 8 C 1.47477 * 111.00075 * 74.02853 * 7 6 5 9 9 C 1.53510 * 87.93434 * 138.70391 * 8 7 6 10 10 C 1.50701 * 114.17219 * 220.33144 * 9 8 7 11 11 H 1.08001 * 120.00316 * 93.83554 * 10 9 8 12 12 C 1.37878 * 119.99518 * 273.83854 * 10 9 8 13 13 N 1.31510 * 120.00396 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99861 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47317 * 89.99687 * 14 12 10 16 16 H 1.48501 * 109.47096 * 209.99915 * 14 12 10 17 17 H 1.48506 * 109.47148 * 329.99679 * 14 12 10 18 18 C 1.47489 * 110.99919 * 169.99763 * 7 6 5 19 19 H 1.09001 * 109.47066 * 299.99909 * 1 2 3 20 20 H 1.08996 * 109.47747 * 59.99575 * 1 2 3 21 21 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 59.99783 * 5 2 1 23 23 H 1.09001 * 109.46832 * 299.99974 * 5 2 1 24 24 H 1.09001 * 109.47194 * 299.99650 * 6 5 2 25 25 H 1.08992 * 109.47399 * 59.99823 * 6 5 2 26 26 H 1.09006 * 113.47280 * 253.46465 * 8 7 6 27 27 H 1.08995 * 113.48008 * 23.93226 * 8 7 6 28 28 H 1.09001 * 114.35108 * 87.63208 * 9 8 7 29 29 H 0.96996 * 120.00181 * 179.97438 * 13 12 10 30 30 H 1.09002 * 113.47515 * 336.06433 * 18 7 6 31 31 H 1.08999 * 113.47246 * 106.52749 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 3.5700 -0.7207 1.2494 7 7 4.0597 -1.4137 2.4485 8 6 3.8793 -2.8724 2.3266 9 6 5.2695 -3.0409 2.9553 10 6 6.1031 -4.1281 2.3274 11 1 6.7974 -3.8872 1.5360 12 6 5.9792 -5.4303 2.7632 13 7 5.1341 -5.7236 3.7271 14 14 7.0129 -6.7779 1.9854 15 1 8.2913 -6.9126 2.7289 16 1 6.2715 -8.0634 2.0384 17 1 7.2977 -6.4288 0.5703 18 6 5.5144 -1.6434 2.3691 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6767 -1.7490 1.2492 23 1 1.6767 -0.2075 2.1392 24 1 3.9337 -1.2342 0.3594 25 1 3.9329 0.3070 1.2496 26 1 3.0722 -3.2633 2.9463 27 1 3.8246 -3.2184 1.2945 28 1 5.2690 -3.0741 4.0448 29 1 5.0467 -6.6397 4.0335 30 1 5.8961 -1.6615 1.3483 31 1 6.0931 -0.9928 3.0248 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213337586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:13 Heat of formation + Delta-G solvation = -81.759383 kcal Electronic energy + Delta-G solvation = -15071.995229 eV Core-core repulsion = 12217.730148 eV Total energy + Delta-G solvation = -2854.265081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.88333 -46.86096 -38.97385 -34.00465 -32.52057 -30.45159 -27.28470 -24.88379 -24.46695 -21.98506 -20.88867 -18.64819 -17.54024 -16.79392 -16.35486 -16.08704 -14.89039 -14.62645 -14.09891 -13.86975 -13.63361 -13.30077 -13.17653 -12.81270 -12.62070 -12.16794 -11.98448 -11.63044 -11.34170 -11.17677 -10.98583 -10.82162 -10.50958 -10.24974 -9.72069 -9.20371 -8.93806 -8.44999 -8.02940 -6.06438 -4.10808 3.28677 3.35560 3.38710 3.81052 4.19541 4.34402 4.40983 4.45792 5.05526 5.17960 5.22897 5.35417 5.39324 5.62395 5.67537 5.79652 6.02174 6.08376 6.22917 6.36933 6.48786 6.67097 6.72284 7.10197 7.13917 7.71864 7.89818 8.04837 8.36496 8.92434 9.54293 11.03260 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.047913 B = 0.006176 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.253985 B = 4532.617895 C = 4660.763704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.286 3.714 3 F -0.204 7.204 4 F -0.202 7.202 5 C -0.153 4.153 6 C 0.018 3.982 7 N -0.485 5.485 8 C 0.002 3.998 9 C 0.041 3.959 10 C -0.516 4.516 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.891 3.109 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.005 4.005 19 H 0.088 0.912 20 H 0.077 0.923 21 H 0.089 0.911 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.262 0.738 30 H 0.055 0.945 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 9.185 -5.686 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.249 3.751 3 F -0.185 7.185 4 F -0.184 7.184 5 C -0.191 4.191 6 C -0.111 4.111 7 N -0.207 5.207 8 C -0.127 4.127 9 C 0.022 3.978 10 C -0.555 4.555 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.719 3.281 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.133 4.133 19 H 0.107 0.893 20 H 0.096 0.904 21 H 0.108 0.892 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.635 9.446 -5.064 13.763 hybrid contribution 0.803 -1.071 -1.357 1.906 sum -7.832 8.375 -6.420 13.141 Atomic orbital electron populations 1.22747 0.91821 1.05417 1.04998 1.21209 0.93534 0.75704 0.84664 1.92988 1.90647 1.37945 1.96930 1.93005 1.90613 1.80993 1.53749 1.22534 0.98396 1.02510 0.95692 1.22535 0.93283 1.00571 0.94676 1.68896 1.08875 1.10820 1.32097 1.24059 1.02647 0.86054 0.99903 1.20099 0.91000 0.89549 0.97129 1.21047 1.22817 0.92046 1.19559 0.92418 1.25014 0.95139 0.98759 0.94680 1.69963 1.35563 1.19398 1.27523 0.86611 0.80373 0.81332 0.79800 1.20518 1.21176 1.19865 1.24010 0.88864 1.00521 0.99950 0.89280 0.90354 0.89228 0.88780 0.88380 0.93835 0.91104 0.91773 0.92812 0.91729 0.92860 0.92711 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 9.38 37.15 0.35 -1.43 16 2 C 0.29 3.73 2.11 -26.74 -0.06 3.67 16 3 F -0.20 -2.91 16.54 2.25 0.04 -2.87 16 4 F -0.20 -3.07 16.54 2.25 0.04 -3.03 16 5 C -0.15 -2.19 4.91 -26.73 -0.13 -2.32 16 6 C 0.02 0.32 4.58 -3.82 -0.02 0.31 16 7 N -0.48 -9.90 6.41 -244.63 -1.57 -11.47 16 8 C 0.00 0.05 6.57 -7.55 -0.05 0.00 16 9 C 0.04 1.04 3.77 -91.24 -0.34 0.70 16 10 C -0.52 -14.14 8.82 -34.44 -0.30 -14.45 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -25.54 13.26 55.43 0.74 -24.80 16 14 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.00 -0.10 7.27 -7.54 -0.05 -0.16 16 19 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.09 1.35 7.67 -51.93 -0.40 0.95 16 23 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 24 H 0.04 0.81 7.22 -51.93 -0.37 0.43 16 25 H 0.07 1.20 7.80 -51.93 -0.41 0.79 16 26 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.05 1.25 7.66 -51.93 -0.40 0.85 16 28 H 0.06 1.78 8.11 -51.93 -0.42 1.35 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.05 1.17 7.72 -51.93 -0.40 0.77 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 267.65 15.07 4.03 4.03 Total: -1.00 -28.80 267.65 -6.93 -35.73 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.48 Total: -1.72 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.71 Total: -11.93 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.83 Total: -36.27 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.07 Total: -5.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.80 -6.93 -35.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213337586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.029 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds