Wall clock time and date at job start Mon Mar 30 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39905 * 109.47115 * 2 1 4 4 F 1.39900 * 109.47126 * 240.00346 * 2 1 3 5 5 C 1.52997 * 109.47482 * 120.00260 * 2 1 3 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 2 1 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 2 8 8 C 1.47477 * 111.00075 * 74.02853 * 7 6 5 9 9 C 1.53510 * 87.93434 * 138.70391 * 8 7 6 10 10 C 1.50701 * 114.17219 * 220.33144 * 9 8 7 11 11 H 1.08001 * 120.00316 * 93.83554 * 10 9 8 12 12 C 1.37878 * 119.99518 * 273.83854 * 10 9 8 13 13 N 1.31510 * 120.00396 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99861 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47317 * 89.99687 * 14 12 10 16 16 H 1.48501 * 109.47096 * 209.99915 * 14 12 10 17 17 H 1.48506 * 109.47148 * 329.99679 * 14 12 10 18 18 C 1.47489 * 110.99919 * 169.99763 * 7 6 5 19 19 H 1.09001 * 109.47066 * 299.99909 * 1 2 3 20 20 H 1.08996 * 109.47747 * 59.99575 * 1 2 3 21 21 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 59.99783 * 5 2 1 23 23 H 1.09001 * 109.46832 * 299.99974 * 5 2 1 24 24 H 1.09001 * 109.47194 * 299.99650 * 6 5 2 25 25 H 1.08992 * 109.47399 * 59.99823 * 6 5 2 26 26 H 1.09006 * 113.47280 * 253.46465 * 8 7 6 27 27 H 1.08995 * 113.48008 * 23.93226 * 8 7 6 28 28 H 1.09001 * 114.35108 * 87.63208 * 9 8 7 29 29 H 0.96996 * 120.00181 * 179.97438 * 13 12 10 30 30 H 1.09002 * 113.47515 * 336.06433 * 18 7 6 31 31 H 1.08999 * 113.47246 * 106.52749 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 3.5700 -0.7207 1.2494 7 7 4.0597 -1.4137 2.4485 8 6 3.8793 -2.8724 2.3266 9 6 5.2695 -3.0409 2.9553 10 6 6.1031 -4.1281 2.3274 11 1 6.7974 -3.8872 1.5360 12 6 5.9792 -5.4303 2.7632 13 7 5.1341 -5.7236 3.7271 14 14 7.0129 -6.7779 1.9854 15 1 8.2913 -6.9126 2.7289 16 1 6.2715 -8.0634 2.0384 17 1 7.2977 -6.4288 0.5703 18 6 5.5144 -1.6434 2.3691 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6767 -1.7490 1.2492 23 1 1.6767 -0.2075 2.1392 24 1 3.9337 -1.2342 0.3594 25 1 3.9329 0.3070 1.2496 26 1 3.0722 -3.2633 2.9463 27 1 3.8246 -3.2184 1.2945 28 1 5.2690 -3.0741 4.0448 29 1 5.0467 -6.6397 4.0335 30 1 5.8961 -1.6615 1.3483 31 1 6.0931 -0.9928 3.0248 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213337586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:13 Heat of formation + Delta-G solvation = -100.467327 kcal Electronic energy + Delta-G solvation = -15072.806466 eV Core-core repulsion = 12217.730148 eV Total energy + Delta-G solvation = -2855.076318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.96406 -47.95605 -40.73168 -35.40309 -34.35658 -31.72882 -28.92925 -26.69362 -26.17563 -23.33997 -22.19489 -20.51903 -18.73815 -18.57852 -17.61239 -17.20114 -16.64375 -16.39939 -15.63300 -15.53945 -14.92407 -14.52542 -14.31317 -13.97482 -13.86825 -13.40637 -13.30686 -13.09320 -13.01026 -12.89584 -12.67494 -12.41936 -12.08314 -11.85151 -11.49281 -11.11429 -10.86105 -10.51823 -9.77859 -8.16730 -6.28039 1.42429 1.43039 1.53428 2.41562 2.78335 3.10300 3.12482 3.31176 3.46523 3.59269 4.01665 4.12289 4.26703 4.45130 4.48265 4.55653 4.63401 4.68349 4.80031 4.91232 4.97195 4.97463 5.02033 5.20497 5.41203 5.60885 5.83287 6.27142 6.31065 6.80691 7.40512 8.93153 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.047913 B = 0.006176 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.253985 B = 4532.617895 C = 4660.763704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.281 3.719 3 F -0.211 7.211 4 F -0.217 7.217 5 C -0.149 4.149 6 C 0.017 3.983 7 N -0.478 5.478 8 C 0.017 3.983 9 C 0.021 3.979 10 C -0.534 4.534 11 H 0.057 0.943 12 C 0.017 3.983 13 N -0.920 5.920 14 Si 0.957 3.043 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.006 3.994 19 H 0.107 0.893 20 H 0.089 0.911 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.113 0.887 24 H 0.032 0.968 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.058 0.942 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 9.640 -6.487 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.245 3.755 3 F -0.193 7.193 4 F -0.199 7.199 5 C -0.187 4.187 6 C -0.112 4.112 7 N -0.200 5.200 8 C -0.112 4.112 9 C 0.002 3.998 10 C -0.572 4.572 11 H 0.075 0.925 12 C -0.183 4.183 13 N -0.559 5.559 14 Si 0.783 3.217 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.123 4.123 19 H 0.126 0.874 20 H 0.108 0.892 21 H 0.118 0.882 22 H 0.111 0.889 23 H 0.131 0.869 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.158 9.919 -5.872 14.722 hybrid contribution 0.982 -1.154 -1.084 1.863 sum -8.176 8.765 -6.956 13.859 Atomic orbital electron populations 1.22764 0.88422 1.06637 1.06510 1.21500 0.95773 0.74904 0.83328 1.92974 1.91002 1.38417 1.96884 1.92979 1.91051 1.81315 1.54514 1.22520 0.95887 1.03058 0.97283 1.22579 0.95680 1.00249 0.92647 1.68837 1.08079 1.09278 1.33835 1.23768 1.00781 0.87728 0.98958 1.20061 0.92788 0.91480 0.95502 1.21362 1.23109 0.93041 1.19653 0.92517 1.25805 0.96275 1.01052 0.95148 1.70075 1.37025 1.19974 1.28816 0.85569 0.78784 0.78337 0.79058 1.19869 1.20753 1.19229 1.23865 0.89947 0.98454 0.99984 0.87449 0.89244 0.88182 0.88879 0.86896 0.95001 0.90191 0.92641 0.93383 0.94751 0.92728 0.92405 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.91 9.38 71.98 0.68 -2.24 16 2 C 0.28 6.78 2.11 30.59 0.06 6.84 16 3 F -0.21 -5.62 16.54 44.97 0.74 -4.87 16 4 F -0.22 -6.30 16.54 44.97 0.74 -5.55 16 5 C -0.15 -4.00 4.91 30.59 0.15 -3.85 16 6 C 0.02 0.58 4.58 86.30 0.40 0.98 16 7 N -0.48 -19.16 6.41 -927.87 -5.95 -25.11 16 8 C 0.02 0.77 6.57 83.58 0.55 1.32 16 9 C 0.02 1.06 3.77 -11.20 -0.04 1.02 16 10 C -0.53 -29.43 8.82 25.60 0.23 -29.20 16 11 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 12 C 0.02 0.93 5.46 84.66 0.46 1.39 16 13 N -0.92 -53.62 13.26 21.45 0.28 -53.33 16 14 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 C 0.01 0.27 7.27 83.57 0.61 0.87 16 19 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.09 2.53 7.67 -2.39 -0.02 2.51 16 23 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 24 H 0.03 1.15 7.22 -2.39 -0.02 1.14 16 25 H 0.08 2.56 7.80 -2.39 -0.02 2.54 16 26 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 27 H 0.05 2.24 7.66 -2.39 -0.02 2.22 16 28 H 0.03 1.95 8.11 -2.39 -0.02 1.93 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.06 2.43 7.72 -2.39 -0.02 2.41 16 31 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -60.94 267.65 2.04 -58.90 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.10 Total: 7.60 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.09 Total: -22.86 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -5.67 Total: -78.44 kcal Atomic # 9 Polarization: -11.91 SS G_CDS: 1.49 Total: -10.43 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -60.94 2.04 -58.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213337586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.564 kcal (2) G-P(sol) polarization free energy of solvation -60.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds