Wall clock time and date at job start Mon Mar 30 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39904 * 109.46640 * 2 1 4 4 F 1.39895 * 109.47517 * 239.99934 * 2 1 3 5 5 C 1.53000 * 109.46886 * 119.99483 * 2 1 3 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 2 1 7 7 N 1.46894 * 109.47515 * 180.02562 * 6 5 2 8 8 C 1.47475 * 111.00531 * 265.97239 * 7 6 5 9 9 C 1.53505 * 87.93635 * 221.29320 * 8 7 6 10 10 C 1.47477 * 111.00273 * 169.99926 * 7 6 5 11 11 H 1.08999 * 113.47626 * 23.93998 * 10 7 6 12 12 C 1.50702 * 113.47606 * 253.53127 * 10 7 6 13 13 H 1.07999 * 120.00331 * 359.97438 * 12 10 7 14 14 C 1.37880 * 120.00013 * 180.02562 * 12 10 7 15 15 N 1.31523 * 119.99840 * 359.97438 * 14 12 10 16 16 Si 1.86792 * 120.00277 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47316 * 59.99788 * 16 14 12 18 18 H 1.48505 * 109.47694 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47337 * 299.99772 * 16 14 12 20 20 H 1.09002 * 109.47508 * 300.00087 * 1 2 3 21 21 H 1.09000 * 109.47437 * 60.00685 * 1 2 3 22 22 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47398 * 300.00496 * 5 2 1 24 24 H 1.09001 * 109.47194 * 60.00677 * 5 2 1 25 25 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 26 26 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 27 27 H 1.09004 * 113.47287 * 336.06174 * 8 7 6 28 28 H 1.09005 * 113.47669 * 106.52057 * 8 7 6 29 29 H 1.09003 * 114.17314 * 272.37423 * 9 8 7 30 30 H 1.09008 * 114.34422 * 139.67753 * 9 8 7 31 31 H 0.97003 * 119.99567 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7211 1.2493 6 6 3.5699 -0.7206 1.2497 7 7 4.0596 -1.4135 2.4488 8 6 4.3264 -0.4577 3.5397 9 6 5.6001 -1.2554 3.8525 10 6 5.5142 -1.6432 2.3696 11 1 6.0285 -0.9460 1.7080 12 6 5.8814 -3.0799 2.1012 13 1 5.1063 -3.8233 1.9878 14 6 7.2071 -3.4456 2.0013 15 7 8.1512 -2.5403 2.1399 16 14 7.6623 -5.2262 1.6679 17 1 7.0738 -5.6536 0.3731 18 1 9.1404 -5.3564 1.6074 19 1 7.1347 -6.0846 2.7588 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6765 -0.2073 2.1393 24 1 1.6767 -1.7489 1.2494 25 1 3.9337 -1.2342 0.3597 26 1 3.9330 0.3071 1.2498 27 1 4.5237 0.5559 3.1904 28 1 3.5853 -0.4922 4.3383 29 1 5.4482 -2.0869 4.5408 30 1 6.4647 -0.6411 4.1038 31 1 9.0838 -2.7976 2.0692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213337724.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:01 Heat of formation + Delta-G solvation = -79.325256 kcal Electronic energy + Delta-G solvation = -15195.714420 eV Core-core repulsion = 12341.554891 eV Total energy + Delta-G solvation = -2854.159529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.77021 -46.75102 -38.86216 -33.84827 -32.39559 -30.41416 -26.67559 -26.53285 -22.74801 -22.35254 -20.93843 -18.67503 -17.44017 -16.62614 -16.34835 -15.95304 -14.76868 -14.56167 -14.45731 -13.64367 -13.41909 -13.16237 -13.10093 -12.68565 -12.45234 -12.11610 -11.87937 -11.60958 -11.26949 -10.99578 -10.86207 -10.55010 -10.38780 -10.27259 -9.78684 -9.60519 -8.95559 -8.37179 -7.79998 -6.02176 -4.03888 3.34597 3.38372 3.41777 3.91207 4.30441 4.43351 4.48542 4.54553 5.14959 5.27272 5.30716 5.47153 5.53972 5.68359 5.75254 5.82058 5.96228 5.99946 6.26571 6.40506 6.44173 6.76458 6.86630 7.11555 7.35357 7.41242 7.94449 8.23909 8.42224 9.01381 9.60077 11.07830 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.007295 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.925272 B = 3837.526631 C = 4230.659522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.284 3.716 3 F -0.205 7.205 4 F -0.201 7.201 5 C -0.148 4.148 6 C 0.021 3.979 7 N -0.476 5.476 8 C -0.013 4.013 9 C -0.134 4.134 10 C 0.177 3.823 11 H 0.041 0.959 12 C -0.499 4.499 13 H 0.063 0.937 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 5.261 -1.536 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.247 3.753 3 F -0.186 7.186 4 F -0.182 7.182 5 C -0.186 4.186 6 C -0.108 4.108 7 N -0.198 5.198 8 C -0.142 4.142 9 C -0.173 4.173 10 C 0.070 3.930 11 H 0.058 0.942 12 C -0.538 4.538 13 H 0.082 0.918 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.105 0.895 21 H 0.095 0.905 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.694 4.743 -1.511 13.635 hybrid contribution 0.920 -0.055 -0.549 1.072 sum -11.774 4.688 -2.059 12.839 Atomic orbital electron populations 1.22744 0.92047 1.05283 1.04830 1.21249 0.93333 0.75723 0.84979 1.92985 1.90666 1.38049 1.96950 1.93006 1.90594 1.80959 1.53667 1.22518 0.98947 1.02305 0.94866 1.22505 0.92789 0.97956 0.97585 1.68938 1.20268 1.27602 1.03022 1.23866 0.98819 0.94953 0.96567 1.23145 0.94426 0.98387 1.01371 1.20818 0.81992 0.97720 0.92469 0.94154 1.20921 0.91674 0.92725 1.48453 0.91845 1.24985 0.96414 0.97614 0.95078 1.69956 1.00038 1.33297 1.50012 0.86575 0.77061 0.84936 0.78917 1.20245 1.21342 1.20150 0.89467 0.90457 0.89277 0.89489 0.88387 0.90492 0.94243 0.93092 0.91798 0.90530 0.92600 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 9.38 37.16 0.35 -1.50 16 2 C 0.28 3.95 2.11 -26.73 -0.06 3.89 16 3 F -0.21 -3.17 16.54 2.25 0.04 -3.13 16 4 F -0.20 -3.25 16.54 2.25 0.04 -3.22 16 5 C -0.15 -2.22 5.13 -26.73 -0.14 -2.36 16 6 C 0.02 0.41 4.57 -3.83 -0.02 0.39 16 7 N -0.48 -10.44 6.11 -237.97 -1.45 -11.89 16 8 C -0.01 -0.25 7.71 -7.56 -0.06 -0.31 16 9 C -0.13 -3.10 8.00 -26.20 -0.21 -3.31 16 10 C 0.18 4.55 2.74 -72.60 -0.20 4.35 16 11 H 0.04 1.13 7.90 -51.93 -0.41 0.72 16 12 C -0.50 -14.09 9.06 -34.44 -0.31 -14.40 16 13 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 14 C 0.06 1.72 5.46 -17.81 -0.10 1.63 16 15 N -0.89 -26.14 13.28 55.43 0.74 -25.41 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 25 H 0.08 1.64 7.74 -51.93 -0.40 1.24 16 26 H 0.04 0.76 6.96 -51.93 -0.36 0.40 16 27 H 0.05 0.95 7.42 -51.93 -0.39 0.57 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.80 8.11 -51.93 -0.42 1.38 16 30 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 268.75 15.07 4.05 4.05 Total: -1.00 -29.75 268.75 -6.84 -36.58 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.48 Total: -2.00 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.74 Total: -11.63 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.72 Total: -37.30 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.07 Total: -6.35 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.75 -6.84 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213337724.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.741 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds