Wall clock time and date at job start Mon Mar 30 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39904 * 109.46640 * 2 1 4 4 F 1.39895 * 109.47517 * 239.99934 * 2 1 3 5 5 C 1.53000 * 109.46886 * 119.99483 * 2 1 3 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 2 1 7 7 N 1.46894 * 109.47515 * 180.02562 * 6 5 2 8 8 C 1.47475 * 111.00531 * 265.97239 * 7 6 5 9 9 C 1.53505 * 87.93635 * 221.29320 * 8 7 6 10 10 C 1.47477 * 111.00273 * 169.99926 * 7 6 5 11 11 H 1.08999 * 113.47626 * 23.93998 * 10 7 6 12 12 C 1.50702 * 113.47606 * 253.53127 * 10 7 6 13 13 H 1.07999 * 120.00331 * 359.97438 * 12 10 7 14 14 C 1.37880 * 120.00013 * 180.02562 * 12 10 7 15 15 N 1.31523 * 119.99840 * 359.97438 * 14 12 10 16 16 Si 1.86792 * 120.00277 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47316 * 59.99788 * 16 14 12 18 18 H 1.48505 * 109.47694 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47337 * 299.99772 * 16 14 12 20 20 H 1.09002 * 109.47508 * 300.00087 * 1 2 3 21 21 H 1.09000 * 109.47437 * 60.00685 * 1 2 3 22 22 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47398 * 300.00496 * 5 2 1 24 24 H 1.09001 * 109.47194 * 60.00677 * 5 2 1 25 25 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 26 26 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 27 27 H 1.09004 * 113.47287 * 336.06174 * 8 7 6 28 28 H 1.09005 * 113.47669 * 106.52057 * 8 7 6 29 29 H 1.09003 * 114.17314 * 272.37423 * 9 8 7 30 30 H 1.09008 * 114.34422 * 139.67753 * 9 8 7 31 31 H 0.97003 * 119.99567 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7211 1.2493 6 6 3.5699 -0.7206 1.2497 7 7 4.0596 -1.4135 2.4488 8 6 4.3264 -0.4577 3.5397 9 6 5.6001 -1.2554 3.8525 10 6 5.5142 -1.6432 2.3696 11 1 6.0285 -0.9460 1.7080 12 6 5.8814 -3.0799 2.1012 13 1 5.1063 -3.8233 1.9878 14 6 7.2071 -3.4456 2.0013 15 7 8.1512 -2.5403 2.1399 16 14 7.6623 -5.2262 1.6679 17 1 7.0738 -5.6536 0.3731 18 1 9.1404 -5.3564 1.6074 19 1 7.1347 -6.0846 2.7588 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6765 -0.2073 2.1393 24 1 1.6767 -1.7489 1.2494 25 1 3.9337 -1.2342 0.3597 26 1 3.9330 0.3071 1.2498 27 1 4.5237 0.5559 3.1904 28 1 3.5853 -0.4922 4.3383 29 1 5.4482 -2.0869 4.5408 30 1 6.4647 -0.6411 4.1038 31 1 9.0838 -2.7976 2.0692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213337724.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:01 Heat of formation + Delta-G solvation = -99.101576 kcal Electronic energy + Delta-G solvation = -15196.571986 eV Core-core repulsion = 12341.554891 eV Total energy + Delta-G solvation = -2855.017095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.93073 -47.93260 -40.64428 -35.22745 -34.39711 -31.65886 -28.73185 -27.95474 -24.68459 -23.71032 -22.22602 -20.52916 -18.66390 -18.56442 -17.66139 -17.17311 -16.62823 -16.21816 -16.08863 -15.26316 -14.86125 -14.37254 -14.28384 -13.92657 -13.80357 -13.34684 -13.22126 -13.06423 -13.00435 -12.78143 -12.41811 -12.29858 -12.11888 -12.08249 -11.61242 -11.29185 -10.90404 -10.47726 -9.60830 -8.17689 -6.26880 1.41025 1.43247 1.51250 2.40562 2.85167 3.10074 3.18396 3.36980 3.51488 3.70906 3.95674 4.10491 4.27393 4.36155 4.52502 4.63736 4.69011 4.76196 4.80291 4.95015 5.00159 5.04276 5.07968 5.26519 5.44954 5.52343 5.79799 6.28977 6.44243 6.82879 7.40946 8.91921 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.007295 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.925272 B = 3837.526631 C = 4230.659522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.275 3.725 3 F -0.216 7.216 4 F -0.219 7.219 5 C -0.139 4.139 6 C 0.021 3.979 7 N -0.479 5.479 8 C 0.006 3.994 9 C -0.133 4.133 10 C 0.164 3.836 11 H 0.006 0.994 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.962 3.038 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.267 1.267 20 H 0.108 0.892 21 H 0.086 0.914 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 5.058 -1.011 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.239 3.761 3 F -0.198 7.198 4 F -0.201 7.201 5 C -0.177 4.177 6 C -0.108 4.108 7 N -0.202 5.202 8 C -0.123 4.123 9 C -0.172 4.172 10 C 0.056 3.944 11 H 0.024 0.976 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.187 4.187 15 N -0.565 5.565 16 Si 0.787 3.213 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.192 1.192 20 H 0.127 0.873 21 H 0.105 0.895 22 H 0.122 0.878 23 H 0.129 0.871 24 H 0.122 0.878 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.508 4.548 -0.984 15.236 hybrid contribution 1.488 0.048 -0.725 1.656 sum -13.021 4.596 -1.709 13.914 Atomic orbital electron populations 1.22748 0.88001 1.06800 1.06415 1.21682 0.95998 0.74792 0.83659 1.92964 1.91114 1.38772 1.96914 1.92974 1.91123 1.81333 1.54642 1.22467 0.95167 1.03384 0.96681 1.22480 0.96104 0.96840 0.95363 1.68879 1.17504 1.29247 1.04563 1.23813 0.97616 0.94556 0.96312 1.23027 0.96200 0.98764 0.99208 1.20708 0.84367 0.95868 0.93473 0.97602 1.21214 0.91907 0.93885 1.48763 0.92697 1.25790 0.96268 1.01884 0.94769 1.70068 1.00313 1.35279 1.50843 0.85549 0.76958 0.79829 0.78947 1.19840 1.20666 1.19206 0.87327 0.89506 0.87808 0.87126 0.87789 0.93507 0.94582 0.91921 0.88407 0.91089 0.93381 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.38 71.98 0.68 -2.24 16 2 C 0.28 7.16 2.11 30.59 0.06 7.22 16 3 F -0.22 -6.38 16.54 44.97 0.74 -5.63 16 4 F -0.22 -6.99 16.54 44.97 0.74 -6.25 16 5 C -0.14 -3.89 5.13 30.59 0.16 -3.73 16 6 C 0.02 0.83 4.57 86.30 0.39 1.22 16 7 N -0.48 -20.80 6.11 -906.79 -5.54 -26.34 16 8 C 0.01 0.22 7.71 83.57 0.64 0.86 16 9 C -0.13 -6.15 8.00 30.94 0.25 -5.90 16 10 C 0.16 8.60 2.74 41.43 0.11 8.72 16 11 H 0.01 0.36 7.90 -2.39 -0.02 0.34 16 12 C -0.52 -29.87 9.06 25.60 0.23 -29.64 16 13 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 14 C 0.01 0.68 5.46 84.65 0.46 1.14 16 15 N -0.93 -55.14 13.28 21.45 0.28 -54.86 16 16 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 24 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 25 H 0.05 2.06 7.74 -2.39 -0.02 2.05 16 26 H 0.04 1.40 6.96 -2.39 -0.02 1.38 16 27 H 0.06 2.23 7.42 -2.38 -0.02 2.21 16 28 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 29 H 0.07 3.32 8.11 -2.39 -0.02 3.30 16 30 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -64.96 268.75 2.35 -62.61 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.10 Total: 6.11 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 2.99 Total: -22.36 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -5.25 Total: -81.20 kcal Atomic # 9 Polarization: -13.37 SS G_CDS: 1.49 Total: -11.88 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.96 2.35 -62.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213337724.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.491 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds