Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31756 * 1 3 3 O 1.35637 * 120.00224 * 2 1 4 4 C 1.35981 * 117.99899 * 185.06061 * 3 2 1 5 5 C 1.38548 * 120.08515 * 354.49368 * 4 3 2 6 6 C 1.38264 * 120.01412 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.18865 * 359.97438 * 6 5 4 8 8 C 1.38221 * 120.16667 * 0.02562 * 7 6 5 9 9 C 1.38732 * 119.98185 * 359.97438 * 8 7 6 10 10 N 1.39931 * 120.08978 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00294 * 359.97438 * 10 9 8 12 12 C 1.50691 * 109.47282 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00223 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00003 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99567 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99965 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.46923 * 90.00233 * 16 14 12 18 18 H 1.48497 * 109.46802 * 210.00318 * 16 14 12 19 19 H 1.48502 * 109.46873 * 330.00087 * 16 14 12 20 20 H 1.07994 * 120.00350 * 180.02562 * 1 2 3 21 21 H 1.08001 * 119.99353 * 359.97438 * 1 2 3 22 22 H 1.08006 * 120.00064 * 180.02562 * 2 1 3 23 23 H 1.07995 * 119.99328 * 0.02562 * 5 4 3 24 24 H 1.08003 * 119.90620 * 180.27597 * 6 5 4 25 25 H 1.07998 * 119.91947 * 180.02562 * 7 6 5 26 26 H 1.08005 * 120.00705 * 179.97438 * 8 7 6 27 27 H 0.96998 * 119.99670 * 180.02562 * 10 9 8 28 28 H 1.09007 * 109.46513 * 300.00236 * 11 10 9 29 29 H 1.08997 * 109.46987 * 59.99658 * 11 10 9 30 30 H 0.97001 * 119.99121 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3176 0.0000 0.0000 3 8 1.9958 1.1746 0.0000 4 6 3.3507 1.1294 -0.1059 5 6 4.0079 -0.0902 -0.0948 6 6 5.3857 -0.1344 -0.2021 7 6 6.1117 1.0362 -0.3211 8 6 5.4639 2.2572 -0.3330 9 6 4.0817 2.3097 -0.2259 10 7 3.4236 3.5445 -0.2371 11 6 4.1942 4.7843 -0.3616 12 6 3.2554 5.9629 -0.3472 13 1 2.1911 5.8045 -0.2549 14 6 3.7551 7.2437 -0.4528 15 7 2.9356 8.2723 -0.4406 16 14 5.5959 7.5177 -0.6130 17 1 5.9730 7.5186 -2.0493 18 1 5.9566 8.8239 -0.0057 19 1 6.3214 6.4284 0.0886 20 1 -0.5400 -0.9352 0.0004 21 1 -0.5399 0.9354 0.0004 22 1 1.8576 -0.9354 -0.0004 23 1 3.4440 -1.0065 -0.0024 24 1 5.8959 -1.0863 -0.1977 25 1 7.1877 0.9966 -0.4050 26 1 6.0336 3.1701 -0.4257 27 1 2.4572 3.5797 -0.1617 28 1 4.8906 4.8645 0.4732 29 1 4.7504 4.7737 -1.2989 30 1 3.2873 9.1733 -0.5146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238104338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = 20.061140 kcal Electronic energy + Delta-G solvation = -14016.867722 eV Core-core repulsion = 11585.414346 eV Total energy + Delta-G solvation = -2431.453376 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31320 -37.79850 -35.14093 -32.64681 -31.90736 -29.81018 -29.25092 -26.63437 -23.60458 -22.09026 -21.38990 -19.91009 -18.67999 -17.23051 -16.01481 -15.75333 -15.19929 -14.81418 -14.47220 -13.88404 -13.72601 -13.33697 -13.08509 -12.96106 -12.43434 -11.93834 -11.65441 -11.34158 -11.01131 -10.89932 -10.49525 -10.01055 -9.63748 -9.49034 -9.25982 -8.71708 -8.10175 -6.59695 -6.22727 -4.24690 1.55287 1.92609 2.47216 3.20690 3.27837 3.29525 3.33951 4.18626 4.25280 4.30317 4.71687 5.11176 5.11751 5.27165 5.49023 5.72477 5.76450 5.95531 6.09690 6.22053 6.40735 6.52282 6.61041 6.67203 6.89130 6.97284 7.13856 7.35067 7.71574 8.00220 8.38860 8.57804 8.81216 9.36019 10.89830 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.007744 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.975949 B = 3614.739887 C = 4516.385600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.029 3.971 3 O -0.252 6.252 4 C 0.016 3.984 5 C -0.150 4.150 6 C -0.169 4.169 7 C -0.091 4.091 8 C -0.183 4.183 9 C 0.225 3.775 10 N -0.715 5.715 11 C 0.223 3.777 12 C -0.541 4.541 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.892 5.892 16 Si 0.879 3.121 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.263 1.263 20 H 0.122 0.878 21 H 0.105 0.895 22 H 0.125 0.875 23 H 0.123 0.877 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.403 0.597 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 -15.997 0.402 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.032 4.032 3 O -0.162 6.162 4 C -0.031 4.031 5 C -0.170 4.170 6 C -0.190 4.190 7 C -0.110 4.110 8 C -0.207 4.207 9 C 0.115 3.885 10 N -0.339 5.339 11 C 0.100 3.900 12 C -0.579 4.579 13 H 0.097 0.903 14 C -0.128 4.128 15 N -0.529 5.529 16 Si 0.705 3.295 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.188 1.188 20 H 0.140 0.860 21 H 0.124 0.876 22 H 0.142 0.858 23 H 0.141 0.859 24 H 0.134 0.866 25 H 0.136 0.864 26 H 0.147 0.853 27 H 0.238 0.762 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.901 -15.348 0.389 15.625 hybrid contribution 0.556 0.118 -0.066 0.572 sum 3.456 -15.230 0.322 15.621 Atomic orbital electron populations 1.23446 0.93406 1.03132 1.09564 1.22509 0.93272 0.88094 0.99356 1.84284 1.17195 1.30644 1.84100 1.18412 0.80908 0.93460 1.10332 1.20839 0.95574 0.95630 1.04919 1.20490 0.92902 0.97927 1.07646 1.20806 0.99284 0.91855 0.99051 1.20574 0.91582 0.98831 1.09671 1.17461 0.91369 0.84556 0.95074 1.45166 1.09549 1.02353 1.76844 1.19519 0.93003 0.82008 0.95436 1.21066 0.95106 0.89226 1.52463 0.90296 1.24828 0.98233 0.95640 0.94073 1.69889 1.34957 0.98809 1.49252 0.86796 0.85455 0.78213 0.78989 1.19835 1.20819 1.18772 0.86017 0.87624 0.85815 0.85935 0.86641 0.86376 0.85265 0.76213 0.96326 0.96790 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -3.10 14.63 28.85 0.42 -2.68 16 2 C 0.03 0.39 10.00 28.85 0.29 0.68 16 3 O -0.25 -4.34 9.26 -3.06 -0.03 -4.37 16 4 C 0.02 0.28 6.68 -39.06 -0.26 0.02 16 5 C -0.15 -2.17 9.19 -39.46 -0.36 -2.53 16 6 C -0.17 -2.30 10.04 -39.56 -0.40 -2.69 16 7 C -0.09 -1.33 10.04 -39.58 -0.40 -1.73 16 8 C -0.18 -3.22 9.31 -39.40 -0.37 -3.58 16 9 C 0.22 4.35 6.67 -83.57 -0.56 3.79 16 10 N -0.72 -15.56 5.72 -59.67 -0.34 -15.90 16 11 C 0.22 5.35 3.74 -5.20 -0.02 5.33 16 12 C -0.54 -15.13 9.83 -34.44 -0.34 -15.47 16 13 H 0.08 2.38 7.84 -52.49 -0.41 1.96 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 16 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 20 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 21 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 22 H 0.12 1.32 5.58 -52.48 -0.29 1.03 16 23 H 0.12 1.41 5.72 -52.49 -0.30 1.11 16 24 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 25 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 26 H 0.13 2.29 6.74 -52.48 -0.35 1.94 16 27 H 0.40 8.82 7.69 -40.82 -0.31 8.50 16 28 H 0.02 0.46 7.01 -51.93 -0.36 0.09 16 29 H 0.01 0.34 7.38 -51.93 -0.38 -0.04 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -29.87 261.26 -5.69 -35.56 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.28 Total: 7.41 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.09 Total: -16.81 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.43 Total: -41.86 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.03 Total: -4.37 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.87 -5.69 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238104338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.622 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds