Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31756 * 1 3 3 O 1.35637 * 120.00224 * 2 1 4 4 C 1.35981 * 117.99899 * 185.06061 * 3 2 1 5 5 C 1.38548 * 120.08515 * 354.49368 * 4 3 2 6 6 C 1.38264 * 120.01412 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.18865 * 359.97438 * 6 5 4 8 8 C 1.38221 * 120.16667 * 0.02562 * 7 6 5 9 9 C 1.38732 * 119.98185 * 359.97438 * 8 7 6 10 10 N 1.39931 * 120.08978 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00294 * 359.97438 * 10 9 8 12 12 C 1.50691 * 109.47282 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00223 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00003 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99567 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99965 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.46923 * 90.00233 * 16 14 12 18 18 H 1.48497 * 109.46802 * 210.00318 * 16 14 12 19 19 H 1.48502 * 109.46873 * 330.00087 * 16 14 12 20 20 H 1.07994 * 120.00350 * 180.02562 * 1 2 3 21 21 H 1.08001 * 119.99353 * 359.97438 * 1 2 3 22 22 H 1.08006 * 120.00064 * 180.02562 * 2 1 3 23 23 H 1.07995 * 119.99328 * 0.02562 * 5 4 3 24 24 H 1.08003 * 119.90620 * 180.27597 * 6 5 4 25 25 H 1.07998 * 119.91947 * 180.02562 * 7 6 5 26 26 H 1.08005 * 120.00705 * 179.97438 * 8 7 6 27 27 H 0.96998 * 119.99670 * 180.02562 * 10 9 8 28 28 H 1.09007 * 109.46513 * 300.00236 * 11 10 9 29 29 H 1.08997 * 109.46987 * 59.99658 * 11 10 9 30 30 H 0.97001 * 119.99121 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3176 0.0000 0.0000 3 8 1.9958 1.1746 0.0000 4 6 3.3507 1.1294 -0.1059 5 6 4.0079 -0.0902 -0.0948 6 6 5.3857 -0.1344 -0.2021 7 6 6.1117 1.0362 -0.3211 8 6 5.4639 2.2572 -0.3330 9 6 4.0817 2.3097 -0.2259 10 7 3.4236 3.5445 -0.2371 11 6 4.1942 4.7843 -0.3616 12 6 3.2554 5.9629 -0.3472 13 1 2.1911 5.8045 -0.2549 14 6 3.7551 7.2437 -0.4528 15 7 2.9356 8.2723 -0.4406 16 14 5.5959 7.5177 -0.6130 17 1 5.9730 7.5186 -2.0493 18 1 5.9566 8.8239 -0.0057 19 1 6.3214 6.4284 0.0886 20 1 -0.5400 -0.9352 0.0004 21 1 -0.5399 0.9354 0.0004 22 1 1.8576 -0.9354 -0.0004 23 1 3.4440 -1.0065 -0.0024 24 1 5.8959 -1.0863 -0.1977 25 1 7.1877 0.9966 -0.4050 26 1 6.0336 3.1701 -0.4257 27 1 2.4572 3.5797 -0.1617 28 1 4.8906 4.8645 0.4732 29 1 4.7504 4.7737 -1.2989 30 1 3.2873 9.1733 -0.5146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238104338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = 0.325421 kcal Electronic energy + Delta-G solvation = -14017.723527 eV Core-core repulsion = 11585.414346 eV Total energy + Delta-G solvation = -2432.309181 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.51509 -39.04987 -36.70605 -34.65016 -33.00893 -31.18305 -30.69415 -28.28789 -25.02414 -23.58787 -22.75441 -21.12561 -20.02657 -18.97738 -17.53314 -17.16341 -16.42438 -16.35567 -15.83725 -15.26342 -15.11622 -15.04982 -14.59053 -14.24918 -13.98552 -13.32449 -12.97981 -12.70392 -12.66828 -12.46976 -11.88737 -11.69848 -11.61008 -11.11949 -10.79753 -10.34705 -9.28195 -8.40825 -8.03228 -6.49654 0.38185 0.69638 1.33777 1.35751 1.45497 1.47241 2.21228 2.28095 2.77301 2.92716 2.98171 3.73865 4.01183 4.18247 4.40244 4.55325 4.62241 4.68170 4.89317 4.98006 5.05043 5.16026 5.26320 5.31995 5.45836 5.58029 5.70594 5.86645 6.05326 6.47600 6.53665 6.77784 7.00574 7.18018 8.75458 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.007744 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.975949 B = 3614.739887 C = 4516.385600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.003 3.997 3 O -0.283 6.283 4 C 0.006 3.994 5 C -0.149 4.149 6 C -0.150 4.150 7 C -0.092 4.092 8 C -0.196 4.196 9 C 0.183 3.817 10 N -0.735 5.735 11 C 0.242 3.758 12 C -0.555 4.555 13 H 0.037 0.963 14 C 0.016 3.984 15 N -0.940 5.940 16 Si 0.953 3.047 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.244 1.244 20 H 0.158 0.842 21 H 0.087 0.913 22 H 0.157 0.843 23 H 0.157 0.843 24 H 0.157 0.843 25 H 0.151 0.849 26 H 0.121 0.879 27 H 0.394 0.606 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -19.014 0.319 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.057 4.057 3 O -0.194 6.194 4 C -0.041 4.041 5 C -0.168 4.168 6 C -0.171 4.171 7 C -0.110 4.110 8 C -0.219 4.219 9 C 0.077 3.923 10 N -0.362 5.362 11 C 0.118 3.882 12 C -0.593 4.593 13 H 0.055 0.945 14 C -0.183 4.183 15 N -0.579 5.579 16 Si 0.775 3.225 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.167 1.167 20 H 0.175 0.825 21 H 0.105 0.895 22 H 0.174 0.826 23 H 0.174 0.826 24 H 0.175 0.825 25 H 0.169 0.831 26 H 0.139 0.861 27 H 0.227 0.773 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.199 -18.435 0.308 19.157 hybrid contribution -0.288 0.877 -0.027 0.923 sum 4.912 -17.558 0.282 18.235 Atomic orbital electron populations 1.23797 0.93224 1.03958 1.07505 1.23038 0.93787 0.88178 1.00665 1.84263 1.17471 1.33032 1.84660 1.18673 0.81296 0.93925 1.10175 1.21276 0.96373 0.95593 1.03551 1.21045 0.92577 0.99279 1.04157 1.21198 1.01026 0.90898 0.97900 1.20753 0.90984 1.00098 1.10097 1.17828 0.92430 0.84160 0.97837 1.44897 1.08881 1.02744 1.79656 1.19127 0.92039 0.81739 0.95302 1.21343 0.94060 0.91396 1.52494 0.94514 1.25859 1.04102 0.95032 0.93311 1.70038 1.37689 0.99533 1.50593 0.85634 0.78422 0.78740 0.79742 1.18578 1.20123 1.16731 0.82478 0.89474 0.82636 0.82594 0.82504 0.83140 0.86119 0.77252 0.96392 0.96526 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.59 14.63 67.09 0.98 -4.61 16 2 C 0.00 0.08 10.00 67.09 0.67 0.75 16 3 O -0.28 -9.82 9.26 -33.87 -0.31 -10.13 16 4 C 0.01 0.21 6.68 22.61 0.15 0.36 16 5 C -0.15 -3.79 9.19 22.35 0.21 -3.58 16 6 C -0.15 -3.38 10.04 22.28 0.22 -3.15 16 7 C -0.09 -2.35 10.04 22.27 0.22 -2.13 16 8 C -0.20 -6.68 9.31 22.38 0.21 -6.47 16 9 C 0.18 7.13 6.67 38.23 0.26 7.39 16 10 N -0.74 -33.55 5.72 -342.69 -1.96 -35.51 16 11 C 0.24 11.95 3.74 85.63 0.32 12.27 16 12 C -0.56 -32.65 9.83 25.60 0.25 -32.40 16 13 H 0.04 2.39 7.84 -2.91 -0.02 2.37 16 14 C 0.02 0.94 5.47 84.66 0.46 1.40 16 15 N -0.94 -58.42 13.96 21.45 0.30 -58.13 16 16 Si 0.95 43.17 27.47 68.60 1.88 45.06 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 20 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 21 H 0.09 2.28 8.06 -2.91 -0.02 2.26 16 22 H 0.16 2.76 5.58 -2.91 -0.02 2.74 16 23 H 0.16 2.81 5.72 -2.91 -0.02 2.80 16 24 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 25 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 26 H 0.12 4.21 6.74 -2.91 -0.02 4.19 16 27 H 0.39 18.67 7.69 -92.71 -0.71 17.95 16 28 H 0.02 0.89 7.01 -2.38 -0.02 0.88 16 29 H 0.02 0.82 7.38 -2.39 -0.02 0.80 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -68.45 261.26 4.24 -64.21 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.38 Total: 24.69 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.95 Total: -30.18 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -1.66 Total: -93.64 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.31 Total: -10.13 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.06 kcal Total: -68.45 4.24 -64.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238104338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.533 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds