Wall clock time and date at job start Mon Mar 30 2020 02:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99710 * 2 1 4 4 N 1.34773 * 120.00155 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99697 * 184.94929 * 4 2 1 6 6 H 1.08999 * 109.47476 * 34.88709 * 5 4 2 7 7 C 1.50707 * 109.46881 * 154.88436 * 5 4 2 8 8 H 1.07997 * 120.00075 * 119.99482 * 7 5 4 9 9 C 1.37882 * 119.99726 * 299.72433 * 7 5 4 10 10 N 1.31512 * 119.99689 * 179.97438 * 9 7 5 11 11 Si 1.86795 * 120.00107 * 0.02562 * 9 7 5 12 12 H 1.48497 * 109.47312 * 89.99776 * 11 9 7 13 13 H 1.48500 * 109.47123 * 210.00096 * 11 9 7 14 14 H 1.48506 * 109.47185 * 329.99923 * 11 9 7 15 15 C 1.50701 * 109.47106 * 274.87957 * 5 4 2 16 16 C 1.38233 * 120.00007 * 319.17338 * 15 5 4 17 17 C 1.38239 * 119.99493 * 179.80940 * 16 15 5 18 18 C 1.38229 * 120.00290 * 0.39463 * 17 16 15 19 19 C 1.38237 * 120.00189 * 359.85559 * 18 17 16 20 20 C 1.38231 * 119.99745 * 139.44266 * 15 5 4 21 21 H 1.09000 * 109.47156 * 269.99632 * 1 2 3 22 22 H 1.09001 * 109.47223 * 29.99546 * 1 2 3 23 23 H 1.08998 * 109.47046 * 149.99784 * 1 2 3 24 24 H 0.96998 * 120.00030 * 4.94732 * 4 2 1 25 25 H 0.97003 * 119.99986 * 179.97438 * 10 9 7 26 26 H 1.07992 * 120.00197 * 359.97438 * 16 15 5 27 27 H 1.08002 * 119.99319 * 180.22453 * 17 16 15 28 28 H 1.08003 * 120.00153 * 179.83730 * 18 17 16 29 29 H 1.07993 * 120.00234 * 179.97438 * 19 18 17 30 30 H 1.08003 * 120.00068 * 359.97438 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6418 -1.1694 0.1089 6 1 3.9589 -0.3535 0.7584 7 6 4.0999 -2.4819 0.6912 8 1 4.7636 -3.1205 0.1274 9 6 3.6758 -2.8646 1.9462 10 7 4.0751 -4.0101 2.4541 11 14 2.5332 -1.7569 2.9242 12 1 1.1228 -2.1031 2.6140 13 1 2.7819 -1.9473 4.3758 14 1 2.7865 -0.3396 2.5603 15 6 4.2483 -0.9878 -1.2586 16 6 3.7036 -1.6405 -2.3486 17 6 4.2576 -1.4707 -3.6037 18 6 5.3612 -0.6547 -3.7674 19 6 5.9092 -0.0060 -2.6766 20 6 5.3528 -0.1728 -1.4221 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6987 -2.0056 -0.0733 25 1 3.7771 -4.2793 3.3371 26 1 2.8436 -2.2810 -2.2200 27 1 3.8297 -1.9779 -4.4558 28 1 5.7956 -0.5241 -4.7476 29 1 6.7716 0.6312 -2.8044 30 1 5.7808 0.3341 -0.5699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238107845.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:54 Heat of formation + Delta-G solvation = -39.171560 kcal Electronic energy + Delta-G solvation = -14674.855613 eV Core-core repulsion = 12240.833715 eV Total energy + Delta-G solvation = -2434.021899 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87196 -39.57323 -36.48052 -34.32473 -32.60725 -31.64642 -30.38306 -28.61608 -24.80286 -23.36464 -22.03594 -21.12711 -19.32047 -17.80524 -17.65479 -17.10235 -16.37507 -15.99314 -15.72936 -15.24049 -14.85394 -14.25639 -14.15828 -13.86218 -13.65825 -13.37711 -12.97990 -12.91748 -12.86837 -12.08850 -11.83813 -11.80477 -11.63606 -11.06136 -10.77095 -9.91193 -9.69247 -9.42356 -8.43965 -6.56175 0.61558 0.63066 1.22794 1.31978 1.44588 1.78185 2.24883 2.47295 3.03556 3.14065 4.03007 4.12051 4.17735 4.28238 4.38126 4.50057 4.62279 4.70206 4.79622 4.89592 5.06433 5.20039 5.27553 5.31502 5.62547 5.68338 5.68713 5.99193 6.09568 6.27366 6.55070 6.87856 7.14184 7.43554 8.69471 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025380 B = 0.012473 C = 0.009703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.972259 B = 2244.371164 C = 2884.930275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.486 3.514 3 O -0.604 6.604 4 N -0.711 5.711 5 C 0.276 3.724 6 H 0.027 0.973 7 C -0.521 4.521 8 H 0.048 0.952 9 C 0.043 3.957 10 N -0.922 5.922 11 Si 0.938 3.062 12 H -0.240 1.240 13 H -0.296 1.296 14 H -0.279 1.279 15 C -0.075 4.075 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.136 4.136 19 C -0.125 4.125 20 C -0.142 4.142 21 H 0.099 0.901 22 H 0.101 0.899 23 H 0.108 0.892 24 H 0.405 0.595 25 H 0.273 0.727 26 H 0.120 0.880 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 4.782 -8.963 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.275 3.725 3 O -0.486 6.486 4 N -0.363 5.363 5 C 0.173 3.827 6 H 0.044 0.956 7 C -0.560 4.560 8 H 0.066 0.934 9 C -0.160 4.160 10 N -0.559 5.559 11 Si 0.764 3.236 12 H -0.163 1.163 13 H -0.223 1.223 14 H -0.205 1.205 15 C -0.077 4.077 16 C -0.141 4.141 17 C -0.144 4.144 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.161 4.161 21 H 0.118 0.882 22 H 0.119 0.881 23 H 0.126 0.874 24 H 0.241 0.759 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.347 5.362 -8.793 11.604 hybrid contribution -0.250 -0.203 1.054 1.102 sum -5.597 5.159 -7.739 10.855 Atomic orbital electron populations 1.21966 0.88532 1.06490 1.05664 1.21817 0.92481 0.83407 0.74790 1.90619 1.72417 1.33046 1.52542 1.47232 1.08616 1.08606 1.71879 1.17734 0.78264 0.95963 0.90717 0.95566 1.21062 1.29923 1.03415 1.01567 0.93420 1.25685 0.96864 0.95654 0.97772 1.70000 1.45298 1.22497 1.18141 0.85879 0.81306 0.79340 0.77110 1.16311 1.22331 1.20485 1.20407 0.95766 0.95460 0.96022 1.21047 1.00791 0.99555 0.92674 1.21443 0.96849 0.99117 0.96954 1.21417 0.96774 0.97686 0.99483 1.21357 1.00485 1.00359 0.92076 1.21158 0.97043 0.99621 0.98281 0.88215 0.88064 0.87369 0.75876 0.91779 0.86222 0.83549 0.83080 0.83986 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 10.31 71.24 0.73 -3.55 16 2 C 0.49 19.03 7.28 87.66 0.64 19.67 16 3 O -0.60 -29.05 16.81 -3.04 -0.05 -29.10 16 4 N -0.71 -29.08 2.20 -449.67 -0.99 -30.07 16 5 C 0.28 13.31 1.49 43.50 0.06 13.37 16 6 H 0.03 1.44 6.55 -2.39 -0.02 1.42 16 7 C -0.52 -28.52 9.17 25.60 0.23 -28.29 16 8 H 0.05 2.91 7.98 -2.91 -0.02 2.88 16 9 C 0.04 2.34 5.47 84.66 0.46 2.80 16 10 N -0.92 -53.95 13.96 21.45 0.30 -53.65 16 11 Si 0.94 43.53 25.56 68.60 1.75 45.28 16 12 H -0.24 -9.66 7.11 99.48 0.71 -8.96 16 13 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 14 H -0.28 -13.83 6.48 99.48 0.64 -13.18 16 15 C -0.08 -3.32 4.85 -19.87 -0.10 -3.42 16 16 C -0.12 -4.65 9.31 22.27 0.21 -4.45 16 17 C -0.13 -3.91 10.05 22.27 0.22 -3.68 16 18 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 19 C -0.12 -4.11 10.05 22.27 0.22 -3.88 16 20 C -0.14 -5.86 9.67 22.27 0.22 -5.65 16 21 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.40 14.73 8.49 -92.71 -0.79 13.94 16 25 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 26 H 0.12 4.29 7.74 -2.91 -0.02 4.27 16 27 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.11 4.39 8.03 -2.91 -0.02 4.36 16 Total: -1.00 -70.08 262.61 4.43 -65.65 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.29 Total: 22.70 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.13 Total: -20.81 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -0.69 Total: -83.72 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.10 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.75 Total: 45.28 kcal Total: -70.08 4.43 -65.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238107845.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.477 kcal (2) G-P(sol) polarization free energy of solvation -70.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds