Wall clock time and date at job start Mon Mar 30 2020 02:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21281 * 119.99492 * 2 1 4 4 N 1.34770 * 120.00033 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99810 * 174.96666 * 4 2 1 6 6 H 1.08992 * 109.47145 * 326.31037 * 5 4 2 7 7 C 1.50701 * 109.46824 * 206.30856 * 5 4 2 8 8 H 1.07999 * 119.99525 * 239.99380 * 7 5 4 9 9 C 1.37873 * 119.99785 * 60.00584 * 7 5 4 10 10 N 1.31515 * 120.00332 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99773 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47448 * 89.99510 * 11 9 7 13 13 H 1.48498 * 109.47166 * 210.00020 * 11 9 7 14 14 H 1.48504 * 109.47114 * 329.99539 * 11 9 7 15 15 C 1.50698 * 109.46801 * 86.31117 * 5 4 2 16 16 C 1.38233 * 120.00202 * 45.28528 * 15 5 4 17 17 C 1.38243 * 120.00232 * 179.79027 * 16 15 5 18 18 C 1.38237 * 119.99538 * 0.43431 * 17 16 15 19 19 C 1.38232 * 120.00021 * 359.81695 * 18 17 16 20 20 C 1.38237 * 120.00414 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47083 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46386 * 120.00054 * 1 2 3 23 23 H 1.08997 * 109.47174 * 240.00009 * 1 2 3 24 24 H 0.96998 * 120.00089 * 354.96930 * 4 2 1 25 25 H 0.97001 * 119.99804 * 180.02562 * 10 9 7 26 26 H 1.08003 * 119.99949 * 359.97438 * 16 15 5 27 27 H 1.07995 * 120.00211 * 180.27663 * 17 16 15 28 28 H 1.08004 * 119.99894 * 179.83856 * 18 17 16 29 29 H 1.08008 * 120.00169 * 180.02562 * 19 18 17 30 30 H 1.07996 * 120.00265 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6418 -1.1696 -0.1108 6 1 3.9593 -0.3413 -0.7441 7 6 4.0969 -2.4707 -0.7198 8 1 4.7605 -3.1214 -0.1697 9 6 3.6663 -2.8302 -1.9793 10 7 2.8580 -2.0379 -2.6490 11 14 4.2311 -4.4428 -2.7345 12 1 3.2764 -5.5207 -2.3713 13 1 4.2841 -4.3056 -4.2121 14 1 5.5818 -4.7839 -2.2203 15 6 4.2501 -1.0163 1.2594 16 6 3.7642 -1.7598 2.3186 17 6 4.3252 -1.6224 3.5746 18 6 5.3661 -0.7347 3.7732 19 6 5.8486 0.0127 2.7151 20 6 5.2905 -0.1280 1.4582 21 1 -0.3633 1.0277 0.0005 22 1 -0.3632 -0.5139 -0.8900 23 1 -0.3633 -0.5138 0.8900 24 1 1.6988 -2.0055 0.0746 25 1 2.5548 -2.2911 -3.5349 26 1 2.9483 -2.4504 2.1642 27 1 3.9485 -2.2066 4.4011 28 1 5.8027 -0.6254 4.7550 29 1 6.6621 0.7059 2.8702 30 1 5.6677 0.4556 0.6315 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238137315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:56 Heat of formation + Delta-G solvation = -25.978081 kcal Electronic energy + Delta-G solvation = -14570.908094 eV Core-core repulsion = 12137.458307 eV Total energy + Delta-G solvation = -2433.449787 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.91292 -37.79970 -34.44380 -32.03194 -30.79613 -30.15781 -28.68756 -26.44977 -23.18200 -21.83348 -20.43231 -19.09603 -16.98033 -16.24981 -15.56853 -14.92708 -14.71713 -14.30212 -13.94462 -13.67536 -12.71781 -12.68647 -12.50974 -11.99365 -11.86403 -11.67949 -11.32610 -11.10768 -11.03184 -10.59459 -10.33932 -9.87679 -9.56361 -8.97859 -8.64717 -8.21966 -7.88472 -7.64370 -6.23841 -4.38643 2.11378 2.14647 3.17434 3.26305 3.30265 3.79095 4.23479 4.42698 4.72574 5.21740 5.52020 5.58226 5.67943 5.75046 5.95251 5.97257 6.09989 6.24576 6.32910 6.46836 6.68121 6.78097 7.13645 7.16844 7.22147 7.55260 7.68702 7.73299 7.87060 8.03653 8.70745 8.97771 9.31278 9.49960 10.80032 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021284 B = 0.012093 C = 0.008812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.240726 B = 2314.763382 C = 3176.673225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.502 3.498 3 O -0.577 6.577 4 N -0.682 5.682 5 C 0.297 3.703 6 H 0.058 0.942 7 C -0.532 4.532 8 H 0.067 0.933 9 C 0.074 3.926 10 N -0.866 5.866 11 Si 0.898 3.102 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.271 1.271 15 C -0.046 4.046 16 C -0.110 4.110 17 C -0.131 4.131 18 C -0.146 4.146 19 C -0.127 4.127 20 C -0.113 4.113 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.387 0.613 25 H 0.265 0.735 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 -0.846 7.161 7.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.288 3.712 3 O -0.459 6.459 4 N -0.328 5.328 5 C 0.196 3.804 6 H 0.076 0.924 7 C -0.570 4.570 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.501 5.501 11 Si 0.725 3.275 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.196 1.196 15 C -0.047 4.047 16 C -0.128 4.128 17 C -0.149 4.149 18 C -0.165 4.165 19 C -0.145 4.145 20 C -0.132 4.132 21 H 0.095 0.905 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.220 0.780 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.967 -0.089 6.951 7.018 hybrid contribution -0.040 -1.319 -0.529 1.422 sum -1.007 -1.408 6.421 6.651 Atomic orbital electron populations 1.21899 0.94525 1.03733 1.03118 1.20525 0.89596 0.84691 0.76384 1.90596 1.70952 1.31924 1.52397 1.46644 1.08902 1.06750 1.70511 1.17640 0.76935 0.98634 0.87202 0.92447 1.21216 1.30324 1.04528 1.00955 0.91518 1.25108 0.94340 0.97235 0.96556 1.70041 1.31574 1.36020 1.12483 0.86495 0.79448 0.83184 0.78352 1.20422 1.21063 1.19589 1.20846 0.94108 0.92418 0.97373 1.20923 1.00132 0.99503 0.92264 1.21017 0.97506 0.99327 0.97023 1.20879 0.98627 0.98711 0.98236 1.21001 1.00150 0.99953 0.93384 1.21051 0.97033 0.98502 0.96617 0.90473 0.90056 0.90850 0.77989 0.92539 0.86712 0.87255 0.87359 0.87128 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.32 36.01 0.37 -2.49 16 2 C 0.50 11.23 7.90 -10.98 -0.09 11.14 16 3 O -0.58 -15.19 16.78 5.56 0.09 -15.10 16 4 N -0.68 -15.32 3.81 -56.06 -0.21 -15.53 16 5 C 0.30 7.34 2.01 -70.23 -0.14 7.20 16 6 H 0.06 1.65 7.42 -51.93 -0.39 1.26 16 7 C -0.53 -13.63 8.55 -34.44 -0.29 -13.92 16 8 H 0.07 1.71 7.74 -52.49 -0.41 1.31 16 9 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 10 N -0.87 -23.24 12.77 55.43 0.71 -22.53 16 11 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 C -0.05 -1.03 4.86 -104.62 -0.51 -1.53 16 16 C -0.11 -2.17 9.28 -39.58 -0.37 -2.54 16 17 C -0.13 -2.26 10.05 -39.58 -0.40 -2.65 16 18 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 19 C -0.13 -2.26 10.05 -39.58 -0.40 -2.65 16 20 C -0.11 -2.37 9.67 -39.58 -0.38 -2.75 16 21 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 22 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.39 8.06 8.61 -40.82 -0.35 7.70 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.11 2.15 7.88 -52.48 -0.41 1.74 16 27 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 30 H 0.12 2.38 8.00 -52.49 -0.42 1.96 16 LS Contribution 268.87 15.07 4.05 4.05 Total: -1.00 -29.90 268.87 -6.73 -36.63 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.65 Total: 8.83 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.70 Total: -11.23 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.49 Total: -38.06 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.10 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.90 -6.73 -36.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238137315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.653 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds