Wall clock time and date at job start Mon Mar 30 2020 02:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21281 * 119.99492 * 2 1 4 4 N 1.34770 * 120.00033 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99810 * 174.96666 * 4 2 1 6 6 H 1.08992 * 109.47145 * 326.31037 * 5 4 2 7 7 C 1.50701 * 109.46824 * 206.30856 * 5 4 2 8 8 H 1.07999 * 119.99525 * 239.99380 * 7 5 4 9 9 C 1.37873 * 119.99785 * 60.00584 * 7 5 4 10 10 N 1.31515 * 120.00332 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99773 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47448 * 89.99510 * 11 9 7 13 13 H 1.48498 * 109.47166 * 210.00020 * 11 9 7 14 14 H 1.48504 * 109.47114 * 329.99539 * 11 9 7 15 15 C 1.50698 * 109.46801 * 86.31117 * 5 4 2 16 16 C 1.38233 * 120.00202 * 45.28528 * 15 5 4 17 17 C 1.38243 * 120.00232 * 179.79027 * 16 15 5 18 18 C 1.38237 * 119.99538 * 0.43431 * 17 16 15 19 19 C 1.38232 * 120.00021 * 359.81695 * 18 17 16 20 20 C 1.38237 * 120.00414 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47083 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46386 * 120.00054 * 1 2 3 23 23 H 1.08997 * 109.47174 * 240.00009 * 1 2 3 24 24 H 0.96998 * 120.00089 * 354.96930 * 4 2 1 25 25 H 0.97001 * 119.99804 * 180.02562 * 10 9 7 26 26 H 1.08003 * 119.99949 * 359.97438 * 16 15 5 27 27 H 1.07995 * 120.00211 * 180.27663 * 17 16 15 28 28 H 1.08004 * 119.99894 * 179.83856 * 18 17 16 29 29 H 1.08008 * 120.00169 * 180.02562 * 19 18 17 30 30 H 1.07996 * 120.00265 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6418 -1.1696 -0.1108 6 1 3.9593 -0.3413 -0.7441 7 6 4.0969 -2.4707 -0.7198 8 1 4.7605 -3.1214 -0.1697 9 6 3.6663 -2.8302 -1.9793 10 7 2.8580 -2.0379 -2.6490 11 14 4.2311 -4.4428 -2.7345 12 1 3.2764 -5.5207 -2.3713 13 1 4.2841 -4.3056 -4.2121 14 1 5.5818 -4.7839 -2.2203 15 6 4.2501 -1.0163 1.2594 16 6 3.7642 -1.7598 2.3186 17 6 4.3252 -1.6224 3.5746 18 6 5.3661 -0.7347 3.7732 19 6 5.8486 0.0127 2.7151 20 6 5.2905 -0.1280 1.4582 21 1 -0.3633 1.0277 0.0005 22 1 -0.3632 -0.5139 -0.8900 23 1 -0.3633 -0.5138 0.8900 24 1 1.6988 -2.0055 0.0746 25 1 2.5548 -2.2911 -3.5349 26 1 2.9483 -2.4504 2.1642 27 1 3.9485 -2.2066 4.4011 28 1 5.8027 -0.6254 4.7550 29 1 6.6621 0.7059 2.8702 30 1 5.6677 0.4556 0.6315 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238137315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:56 Heat of formation + Delta-G solvation = -44.817054 kcal Electronic energy + Delta-G solvation = -14571.725013 eV Core-core repulsion = 12137.458307 eV Total energy + Delta-G solvation = -2434.266706 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.59491 -39.44242 -36.29661 -33.98139 -32.42359 -31.61718 -30.17590 -28.29259 -24.96666 -23.31095 -22.03869 -20.88141 -18.91376 -17.73918 -17.38265 -16.74324 -16.33407 -15.99248 -15.52323 -15.25643 -14.47390 -14.18496 -14.10632 -13.55918 -13.44943 -13.28045 -12.87842 -12.82254 -12.77117 -12.29792 -11.83486 -11.62062 -11.47764 -10.89570 -10.54516 -9.69192 -9.55867 -9.37041 -8.21183 -6.44039 0.64112 0.66742 1.41475 1.44443 1.54494 2.03496 2.37309 2.74539 3.11509 3.32877 4.15766 4.20022 4.26133 4.34476 4.44278 4.61980 4.73489 4.78564 4.85478 5.04584 5.17931 5.27839 5.38143 5.59569 5.70570 5.73683 5.88484 5.96832 6.20186 6.30762 6.68684 7.18293 7.29853 7.74036 8.82162 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021284 B = 0.012093 C = 0.008812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.240726 B = 2314.763382 C = 3176.673225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.488 3.512 3 O -0.626 6.626 4 N -0.676 5.676 5 C 0.304 3.696 6 H -0.001 1.001 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.032 3.968 10 N -0.897 5.897 11 Si 0.965 3.035 12 H -0.265 1.265 13 H -0.287 1.287 14 H -0.272 1.272 15 C -0.077 4.077 16 C -0.122 4.122 17 C -0.124 4.124 18 C -0.137 4.137 19 C -0.125 4.125 20 C -0.145 4.145 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.109 0.891 24 H 0.396 0.604 25 H 0.266 0.734 26 H 0.119 0.881 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -2.225 9.275 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.276 3.724 3 O -0.512 6.512 4 N -0.322 5.322 5 C 0.202 3.798 6 H 0.017 0.983 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.172 4.172 10 N -0.534 5.534 11 Si 0.790 3.210 12 H -0.190 1.190 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.079 4.079 16 C -0.140 4.140 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.143 4.143 20 C -0.164 4.164 21 H 0.105 0.895 22 H 0.111 0.889 23 H 0.127 0.873 24 H 0.230 0.770 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.158 0.842 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.315 -1.494 9.078 9.293 hybrid contribution 0.111 -0.837 -1.122 1.404 sum -1.204 -2.330 7.956 8.377 Atomic orbital electron populations 1.21834 0.89413 1.05158 1.05335 1.21570 0.92126 0.83631 0.75086 1.90565 1.72592 1.33453 1.54551 1.46439 1.08249 1.07436 1.70071 1.17235 0.78340 0.95994 0.88262 0.98316 1.21376 1.30442 1.04805 1.01500 0.91961 1.25835 0.94251 1.00296 0.96775 1.70156 1.32750 1.37680 1.12776 0.85457 0.79015 0.79478 0.77073 1.18976 1.21242 1.19674 1.20697 0.95599 0.94756 0.96805 1.21038 1.00675 0.99511 0.92824 1.21451 0.96886 0.99094 0.96758 1.21396 0.97616 0.96948 0.99545 1.21337 1.00402 1.00303 0.92209 1.21138 0.98004 0.99231 0.97999 0.89528 0.88903 0.87280 0.76985 0.92504 0.86283 0.83424 0.83049 0.84196 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 10.32 71.24 0.74 -4.26 16 2 C 0.49 22.27 7.90 87.66 0.69 22.96 16 3 O -0.63 -34.50 16.78 -3.03 -0.05 -34.55 16 4 N -0.68 -31.25 3.81 -449.68 -1.72 -32.96 16 5 C 0.30 15.83 2.01 43.50 0.09 15.92 16 6 H 0.00 -0.07 7.42 -2.39 -0.02 -0.08 16 7 C -0.54 -28.74 8.55 25.60 0.22 -28.53 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.66 5.39 84.65 0.46 2.12 16 10 N -0.90 -49.44 12.77 21.45 0.27 -49.17 16 11 Si 0.97 41.16 29.54 68.60 2.03 43.18 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 13 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 15 C -0.08 -3.54 4.86 -19.87 -0.10 -3.64 16 16 C -0.12 -4.73 9.28 22.27 0.21 -4.52 16 17 C -0.12 -3.88 10.05 22.27 0.22 -3.65 16 18 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16 19 C -0.12 -4.23 10.05 22.27 0.22 -4.01 16 20 C -0.14 -6.26 9.67 22.27 0.22 -6.04 16 21 H 0.09 2.59 8.12 -2.39 -0.02 2.57 16 22 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 23 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 24 H 0.40 16.65 8.61 -92.71 -0.80 15.85 16 25 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 26 H 0.12 4.36 7.88 -2.91 -0.02 4.34 16 27 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 28 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 30 H 0.10 4.37 8.00 -2.91 -0.02 4.35 16 Total: -1.00 -68.13 268.87 4.06 -64.07 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.34 Total: 26.92 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 3.19 Total: -17.49 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -1.44 Total: -82.13 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.05 Total: -34.55 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -68.13 4.06 -64.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238137315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.252 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds