Wall clock time and date at job start Mon Mar 30 2020 02:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35764 * 116.99847 * 2 1 4 4 C 1.38835 * 120.76638 * 0.02562 * 3 2 1 5 5 C 1.40423 * 118.91074 * 179.72526 * 4 3 2 6 6 C 1.41443 * 119.80413 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.40021 * 119.99903 * 179.97438 * 6 5 4 9 9 N 1.30742 * 119.99789 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99775 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46894 * 90.00712 * 10 8 6 12 12 H 1.48506 * 109.47018 * 210.00262 * 10 8 6 13 13 H 1.48501 * 109.47545 * 330.00370 * 10 8 6 14 14 N 1.33701 * 120.39107 * 359.97438 * 5 4 3 15 15 C 1.31472 * 121.65694 * 359.97438 * 14 5 4 16 16 C 1.38581 * 121.07856 * 0.02562 * 15 14 5 17 17 C 1.50695 * 120.25321 * 180.02562 * 16 15 14 18 18 C 1.53000 * 117.50191 * 8.72205 * 17 16 15 19 19 C 1.53009 * 117.49877 * 300.06122 * 17 16 15 20 20 H 1.08992 * 109.47378 * 60.00153 * 1 2 3 21 21 H 1.09006 * 109.46841 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47302 * 299.99779 * 1 2 3 23 23 H 1.08005 * 120.54173 * 359.69820 * 4 3 2 24 24 H 0.97007 * 119.99997 * 179.97438 * 9 8 6 25 25 H 1.07996 * 119.46325 * 179.97438 * 15 14 5 26 26 H 1.09002 * 115.55160 * 154.39748 * 17 16 15 27 27 H 1.09004 * 117.49532 * 359.97438 * 18 17 16 28 28 H 1.08995 * 117.50391 * 145.02373 * 18 17 16 29 29 H 1.08997 * 117.49721 * 214.98277 * 19 17 16 30 30 H 1.09003 * 117.49478 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.3047 2.3840 0.0005 5 6 1.9824 3.6139 0.0064 6 6 1.2467 4.8220 0.0076 7 1 0.1670 4.7967 0.0044 8 6 1.9182 6.0506 0.0140 9 7 3.2253 6.0812 0.0184 10 14 0.9466 7.6460 0.0163 11 1 0.6847 8.0640 1.4170 12 1 1.7269 8.7018 -0.6777 13 1 -0.3442 7.4405 -0.6886 14 7 3.3189 3.6498 0.0119 15 6 4.0387 2.5496 0.0125 16 6 3.4371 1.3012 0.0069 17 6 4.2802 0.0521 0.0083 18 6 5.7863 0.2166 0.2218 19 6 5.2446 -0.1506 -1.1621 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2252 2.3521 -0.0039 24 1 3.6905 6.9324 0.0224 25 1 5.1163 2.6199 0.0166 26 1 3.8061 -0.8346 0.4291 27 1 6.1674 1.2283 0.3608 28 1 6.3032 -0.5621 0.7826 29 1 5.4053 -1.1706 -1.5110 30 1 5.2689 0.6194 -1.9333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238393089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:11 Heat of formation + Delta-G solvation = 14.986239 kcal Electronic energy + Delta-G solvation = -14399.584304 eV Core-core repulsion = 11967.910864 eV Total energy + Delta-G solvation = -2431.673441 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21740 -37.13442 -36.13277 -33.38251 -29.87293 -29.74631 -26.80988 -25.77844 -22.60162 -21.86403 -21.22730 -19.53618 -18.03938 -16.43242 -15.58807 -15.07439 -14.94403 -14.51349 -13.98516 -13.54138 -13.11376 -12.84221 -12.21970 -11.68194 -11.50597 -11.32535 -11.11366 -10.94619 -10.63464 -10.59107 -10.47480 -10.07261 -9.97006 -9.52852 -9.21634 -7.68731 -7.61184 -7.28021 -6.45288 -4.57462 2.66485 3.02584 3.05936 3.08683 3.14469 3.90421 4.11652 4.49438 4.79997 5.37968 5.60373 5.62135 5.67620 5.68455 5.88018 5.95797 5.98107 6.17681 6.24741 6.45495 6.52596 6.63932 6.70982 6.76644 6.95542 7.10460 7.44181 7.54746 7.87517 8.17443 8.25383 8.65906 8.88558 10.09304 10.27367 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032610 B = 0.008937 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.421079 B = 3132.275744 C = 3906.204341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.326 6.326 3 C 0.183 3.817 4 C -0.359 4.359 5 C 0.275 3.725 6 C -0.428 4.428 7 H 0.083 0.917 8 C 0.068 3.932 9 N -0.711 5.711 10 Si 0.908 3.092 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.261 1.261 14 N -0.495 5.495 15 C 0.157 3.843 16 C -0.278 4.278 17 C -0.057 4.057 18 C -0.191 4.191 19 C -0.188 4.188 20 H 0.049 0.951 21 H 0.085 0.915 22 H 0.049 0.951 23 H 0.105 0.895 24 H 0.274 0.726 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 -5.682 -0.202 5.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.239 6.239 3 C 0.133 3.867 4 C -0.382 4.382 5 C 0.152 3.848 6 C -0.458 4.458 7 H 0.101 0.899 8 C -0.157 4.157 9 N -0.331 5.331 10 Si 0.732 3.268 11 H -0.193 1.193 12 H -0.200 1.200 13 H -0.185 1.185 14 N -0.209 5.209 15 C -0.010 4.010 16 C -0.285 4.285 17 C -0.076 4.076 18 C -0.228 4.228 19 C -0.226 4.226 20 H 0.067 0.933 21 H 0.103 0.897 22 H 0.067 0.933 23 H 0.123 0.877 24 H 0.085 0.915 25 H 0.143 0.857 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.318 -4.875 -0.202 4.890 hybrid contribution -1.091 -0.016 -0.016 1.091 sum -1.409 -4.892 -0.218 5.095 Atomic orbital electron populations 1.22814 0.80063 1.01994 1.01187 1.85901 1.20068 1.28711 1.89234 1.18740 0.91311 0.83018 0.93601 1.21734 0.98654 0.92923 1.24877 1.18373 0.88339 0.91146 0.86983 1.19632 0.94199 0.89418 1.42580 0.89906 1.26095 0.95008 1.01070 0.93572 1.70139 1.07973 1.27105 1.27910 0.86320 0.80534 0.80650 0.79289 1.19336 1.20013 1.18541 1.68785 1.06353 1.27013 1.18759 1.22346 0.98829 0.87245 0.92629 1.18815 0.89605 0.94379 1.25657 1.20358 0.89289 0.97346 1.00599 1.22986 0.97844 1.02181 0.99787 1.22985 1.06333 1.01242 0.91992 0.93273 0.89693 0.93283 0.87719 0.91500 0.85720 0.88727 0.88768 0.89765 0.89979 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.84 101.05 0.99 1.56 16 2 O -0.33 -6.75 9.79 -19.00 -0.19 -6.93 16 3 C 0.18 4.34 6.70 -38.90 -0.26 4.08 16 4 C -0.36 -8.99 8.83 -38.54 -0.34 -9.33 16 5 C 0.28 7.62 6.55 -85.01 -0.56 7.06 16 6 C -0.43 -11.49 9.14 -37.69 -0.34 -11.83 16 7 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 8 C 0.07 1.74 5.50 -17.35 -0.10 1.65 16 9 N -0.71 -18.89 11.46 55.55 0.64 -18.25 16 10 Si 0.91 18.45 29.56 -169.99 -5.02 13.43 16 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 14 N -0.50 -13.80 7.86 -11.19 -0.09 -13.89 16 15 C 0.16 3.86 10.46 -17.58 -0.18 3.68 16 16 C -0.28 -6.46 5.66 -104.03 -0.59 -7.05 16 17 C -0.06 -1.10 5.78 -91.77 -0.53 -1.63 16 18 C -0.19 -3.15 9.87 -26.69 -0.26 -3.41 16 19 C -0.19 -3.17 10.17 -26.69 -0.27 -3.44 16 20 H 0.05 0.77 7.70 -51.93 -0.40 0.37 16 21 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.05 0.77 7.71 -51.93 -0.40 0.37 16 23 H 0.10 2.41 6.45 -52.48 -0.34 2.07 16 24 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 25 H 0.13 2.77 6.02 -52.49 -0.32 2.46 16 26 H 0.09 1.79 7.83 -51.93 -0.41 1.39 16 27 H 0.09 1.58 6.19 -51.93 -0.32 1.26 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 259.09 15.07 3.90 3.90 Total: -1.00 -29.51 259.09 -6.62 -36.12 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.42 Total: 4.29 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -2.44 Total: -18.68 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.55 Total: -32.14 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.19 Total: -6.93 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.51 -6.62 -36.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238393089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.111 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds