Wall clock time and date at job start Mon Mar 30 2020 02:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35764 * 116.99847 * 2 1 4 4 C 1.38835 * 120.76638 * 0.02562 * 3 2 1 5 5 C 1.40423 * 118.91074 * 179.72526 * 4 3 2 6 6 C 1.41443 * 119.80413 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.40021 * 119.99903 * 179.97438 * 6 5 4 9 9 N 1.30742 * 119.99789 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99775 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46894 * 90.00712 * 10 8 6 12 12 H 1.48506 * 109.47018 * 210.00262 * 10 8 6 13 13 H 1.48501 * 109.47545 * 330.00370 * 10 8 6 14 14 N 1.33701 * 120.39107 * 359.97438 * 5 4 3 15 15 C 1.31472 * 121.65694 * 359.97438 * 14 5 4 16 16 C 1.38581 * 121.07856 * 0.02562 * 15 14 5 17 17 C 1.50695 * 120.25321 * 180.02562 * 16 15 14 18 18 C 1.53000 * 117.50191 * 8.72205 * 17 16 15 19 19 C 1.53009 * 117.49877 * 300.06122 * 17 16 15 20 20 H 1.08992 * 109.47378 * 60.00153 * 1 2 3 21 21 H 1.09006 * 109.46841 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47302 * 299.99779 * 1 2 3 23 23 H 1.08005 * 120.54173 * 359.69820 * 4 3 2 24 24 H 0.97007 * 119.99997 * 179.97438 * 9 8 6 25 25 H 1.07996 * 119.46325 * 179.97438 * 15 14 5 26 26 H 1.09002 * 115.55160 * 154.39748 * 17 16 15 27 27 H 1.09004 * 117.49532 * 359.97438 * 18 17 16 28 28 H 1.08995 * 117.50391 * 145.02373 * 18 17 16 29 29 H 1.08997 * 117.49721 * 214.98277 * 19 17 16 30 30 H 1.09003 * 117.49478 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.3047 2.3840 0.0005 5 6 1.9824 3.6139 0.0064 6 6 1.2467 4.8220 0.0076 7 1 0.1670 4.7967 0.0044 8 6 1.9182 6.0506 0.0140 9 7 3.2253 6.0812 0.0184 10 14 0.9466 7.6460 0.0163 11 1 0.6847 8.0640 1.4170 12 1 1.7269 8.7018 -0.6777 13 1 -0.3442 7.4405 -0.6886 14 7 3.3189 3.6498 0.0119 15 6 4.0387 2.5496 0.0125 16 6 3.4371 1.3012 0.0069 17 6 4.2802 0.0521 0.0083 18 6 5.7863 0.2166 0.2218 19 6 5.2446 -0.1506 -1.1621 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2252 2.3521 -0.0039 24 1 3.6905 6.9324 0.0224 25 1 5.1163 2.6199 0.0166 26 1 3.8061 -0.8346 0.4291 27 1 6.1674 1.2283 0.3608 28 1 6.3032 -0.5621 0.7826 29 1 5.4053 -1.1706 -1.5110 30 1 5.2689 0.6194 -1.9333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238393089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:11 Heat of formation + Delta-G solvation = -2.547477 kcal Electronic energy + Delta-G solvation = -14400.344623 eV Core-core repulsion = 11967.910864 eV Total energy + Delta-G solvation = -2432.433760 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97638 -38.78887 -37.73997 -35.25159 -31.75604 -31.56202 -28.34860 -27.57377 -24.32976 -23.41699 -22.86175 -21.20181 -19.85273 -18.21661 -17.30305 -16.77275 -16.50058 -16.15534 -15.42213 -15.26899 -14.83627 -14.56823 -14.05451 -13.38633 -13.00669 -12.93447 -12.73030 -12.54248 -12.23771 -12.19016 -12.05731 -11.65059 -11.57080 -11.05910 -10.99586 -9.61125 -9.54817 -9.07888 -8.33272 -6.55376 0.80383 1.14132 1.39681 1.51285 1.54777 2.21125 2.55517 2.75646 3.23056 3.86664 3.94039 4.17423 4.18975 4.37596 4.39134 4.42013 4.62643 4.67235 4.76992 4.82650 4.88404 4.93278 5.10444 5.22692 5.29034 5.37859 5.58126 5.74706 5.99934 6.22597 6.44889 6.77839 6.94174 8.16400 8.42145 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032610 B = 0.008937 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.421079 B = 3132.275744 C = 3906.204341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.329 6.329 3 C 0.178 3.822 4 C -0.372 4.372 5 C 0.242 3.758 6 C -0.465 4.465 7 H 0.089 0.911 8 C 0.023 3.977 9 N -0.752 5.752 10 Si 0.990 3.010 11 H -0.261 1.261 12 H -0.266 1.266 13 H -0.255 1.255 14 N -0.531 5.531 15 C 0.139 3.861 16 C -0.276 4.276 17 C -0.086 4.086 18 C -0.173 4.173 19 C -0.174 4.174 20 H 0.049 0.951 21 H 0.128 0.872 22 H 0.049 0.951 23 H 0.116 0.884 24 H 0.281 0.719 25 H 0.142 0.858 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 -6.650 -0.249 6.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.242 6.242 3 C 0.127 3.873 4 C -0.395 4.395 5 C 0.118 3.882 6 C -0.495 4.495 7 H 0.107 0.893 8 C -0.199 4.199 9 N -0.373 5.373 10 Si 0.809 3.191 11 H -0.186 1.186 12 H -0.191 1.191 13 H -0.179 1.179 14 N -0.246 5.246 15 C -0.026 4.026 16 C -0.282 4.282 17 C -0.105 4.105 18 C -0.210 4.210 19 C -0.211 4.211 20 H 0.068 0.932 21 H 0.146 0.854 22 H 0.068 0.932 23 H 0.134 0.866 24 H 0.091 0.909 25 H 0.159 0.841 26 H 0.119 0.881 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.474 -5.885 -0.249 5.910 hybrid contribution -1.031 0.081 -0.004 1.034 sum -1.505 -5.805 -0.253 6.002 Atomic orbital electron populations 1.23169 0.77525 1.04867 1.01259 1.85892 1.22595 1.26938 1.88774 1.18898 0.91865 0.83680 0.92880 1.21885 0.99416 0.92922 1.25304 1.18824 0.88846 0.92545 0.88007 1.19996 0.94701 0.90425 1.44425 0.89324 1.27045 0.95994 1.04451 0.92433 1.70234 1.09766 1.28466 1.28844 0.85103 0.78891 0.75515 0.79545 1.18614 1.19076 1.17855 1.68716 1.06874 1.28736 1.20260 1.22691 0.99595 0.87483 0.92854 1.19224 0.90300 0.95529 1.23119 1.20361 0.90500 0.95806 1.03804 1.23074 0.95350 1.02909 0.99653 1.23023 1.04073 1.02531 0.91473 0.93223 0.85422 0.93192 0.86564 0.90865 0.84131 0.88141 0.89409 0.86725 0.87081 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.84 113.37 1.12 1.91 16 2 O -0.33 -13.20 9.79 -90.91 -0.89 -14.09 16 3 C 0.18 8.42 6.70 22.71 0.15 8.57 16 4 C -0.37 -19.04 8.83 22.95 0.20 -18.84 16 5 C 0.24 13.85 6.55 40.18 0.26 14.11 16 6 C -0.46 -25.72 9.14 23.49 0.21 -25.51 16 7 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 8 C 0.02 1.18 5.50 85.29 0.47 1.65 16 9 N -0.75 -41.07 11.46 21.84 0.25 -40.82 16 10 Si 0.99 38.18 29.56 68.60 2.03 40.20 16 11 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 12 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 13 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 14 N -0.53 -30.61 7.86 -189.30 -1.49 -32.10 16 15 C 0.14 6.99 10.46 84.83 0.89 7.88 16 16 C -0.28 -12.78 5.66 -19.48 -0.11 -12.89 16 17 C -0.09 -3.17 5.78 -11.54 -0.07 -3.24 16 18 C -0.17 -5.25 9.87 30.62 0.30 -4.95 16 19 C -0.17 -5.41 10.17 30.62 0.31 -5.10 16 20 H 0.05 1.50 7.70 -2.39 -0.02 1.48 16 21 H 0.13 2.75 8.14 -2.38 -0.02 2.73 16 22 H 0.05 1.50 7.71 -2.38 -0.02 1.48 16 23 H 0.12 5.44 6.45 -2.91 -0.02 5.42 16 24 H 0.28 13.76 8.29 -92.70 -0.77 12.99 16 25 H 0.14 6.34 6.02 -2.91 -0.02 6.33 16 26 H 0.10 3.59 7.83 -2.39 -0.02 3.57 16 27 H 0.09 2.79 6.19 -2.38 -0.01 2.77 16 28 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -65.32 259.09 4.79 -60.54 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 1.14 Total: 22.67 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 3.74 Total: -36.40 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.24 Total: -72.92 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.89 Total: -14.09 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.20 kcal Total: -65.32 4.79 -60.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238393089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.990 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds