Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36831 * 120.00168 * 2 1 4 4 H 1.07997 * 120.00085 * 142.14079 * 3 2 1 5 5 C 1.38760 * 120.00049 * 322.14587 * 3 2 1 6 6 N 1.31618 * 120.00252 * 159.24286 * 5 3 2 7 7 Si 1.86797 * 119.99782 * 339.24233 * 5 3 2 8 8 H 1.48503 * 109.47240 * 95.71494 * 7 5 3 9 9 H 1.48501 * 109.47256 * 215.71914 * 7 5 3 10 10 H 1.48504 * 109.47323 * 335.71678 * 7 5 3 11 11 C 1.39401 * 119.99972 * 179.97438 * 2 1 3 12 12 C 1.39100 * 120.21021 * 179.97438 * 11 2 1 13 13 C 1.37772 * 120.25550 * 180.13249 * 12 11 2 14 14 C 1.39380 * 120.36395 * 0.05104 * 13 12 11 15 15 C 1.39059 * 119.00230 * 359.59828 * 14 13 12 16 16 C 1.37538 * 120.86326 * 0.56310 * 15 14 13 17 17 C 1.51666 * 106.98202 * 180.58204 * 15 14 13 18 18 C 1.54703 * 101.94035 * 15.73590 * 17 15 14 19 19 O 1.36205 * 129.77541 * 179.58805 * 14 13 12 20 20 H 1.09008 * 109.47028 * 265.02633 * 1 2 3 21 21 H 1.08999 * 109.47094 * 25.01623 * 1 2 3 22 22 H 1.08994 * 109.47483 * 145.02558 * 1 2 3 23 23 H 0.96994 * 119.99997 * 179.97438 * 6 5 3 24 24 H 1.07995 * 119.87002 * 0.15922 * 12 11 2 25 25 H 1.08002 * 119.82213 * 180.02562 * 13 12 11 26 26 H 1.08002 * 120.01782 * 179.61860 * 16 15 14 27 27 H 1.08991 * 110.94296 * 257.56403 * 17 15 14 28 28 H 1.08997 * 110.94323 * 133.90072 * 17 15 14 29 29 H 1.08994 * 110.75098 * 92.91029 * 18 17 15 30 30 H 1.09002 * 110.74155 * 216.06752 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.0587 1.2834 0.5740 5 6 1.6744 2.2603 -0.7374 6 7 2.0605 3.4832 -0.4412 7 14 0.4873 1.9721 -2.1506 8 1 -0.9061 2.1599 -1.6727 9 1 0.7713 2.9397 -3.2408 10 1 0.6529 0.5878 -2.6619 11 6 2.1620 -1.2073 0.0005 12 6 3.5530 -1.2124 0.0000 13 6 4.2428 -2.4050 -0.0022 14 6 3.5545 -3.6170 -0.0050 15 6 2.1640 -3.6027 0.0030 16 6 1.4706 -2.4149 0.0019 17 6 1.7062 -5.0486 0.0123 18 6 3.0009 -5.7916 0.4187 19 8 4.0345 -4.8916 -0.0150 20 1 -0.3633 -0.0891 1.0239 21 1 -0.3633 0.9313 -0.4346 22 1 -0.3634 -0.8420 -0.5890 23 1 1.7289 4.2347 -0.9569 24 1 4.0943 -0.2779 0.0018 25 1 5.3228 -2.4008 -0.0022 26 1 0.3906 -2.4198 0.0020 27 1 1.3739 -5.3584 -0.9784 28 1 0.9200 -5.2036 0.7511 29 1 3.0414 -5.9344 1.4985 30 1 3.0757 -6.7480 -0.0988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258870038.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = 16.388802 kcal Electronic energy + Delta-G solvation = -14513.612140 eV Core-core repulsion = 12081.999519 eV Total energy + Delta-G solvation = -2431.612621 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26698 -37.83257 -34.89978 -32.10782 -32.04894 -28.80407 -28.43057 -26.47114 -23.91253 -22.56492 -21.02725 -20.20409 -17.43593 -16.69256 -16.18146 -15.72310 -15.32185 -15.07429 -13.73860 -13.48347 -13.20634 -12.80271 -12.66531 -12.27740 -12.21849 -12.01977 -11.84613 -11.33577 -11.26806 -10.88088 -10.53645 -10.44931 -9.97257 -9.74234 -9.09143 -8.39777 -8.10422 -6.47825 -6.36571 -3.90375 2.14817 2.38923 3.03776 3.21924 3.27545 3.93469 4.11028 4.46982 4.57712 4.88877 4.97371 5.10001 5.29025 5.54894 5.71122 5.79098 5.89156 5.98796 6.09129 6.21182 6.31487 6.32994 6.48945 6.76056 6.89005 7.21289 7.25674 7.44335 7.67915 7.90023 8.15325 8.56654 9.18660 9.47064 10.63479 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.051196 B = 0.008087 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.785171 B = 3461.545542 C = 3749.165570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.479 5.479 3 C -0.316 4.316 4 H 0.102 0.898 5 C 0.055 3.945 6 N -0.867 5.867 7 Si 0.883 3.117 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.262 1.262 11 C 0.204 3.796 12 C -0.168 4.168 13 C -0.079 4.079 14 C -0.015 4.015 15 C -0.120 4.120 16 C -0.190 4.190 17 C -0.108 4.108 18 C 0.056 3.944 19 O -0.317 6.317 20 H 0.045 0.955 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.274 0.726 24 H 0.134 0.866 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -12.281 0.327 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.172 5.172 3 C -0.443 4.443 4 H 0.120 0.880 5 C -0.151 4.151 6 N -0.502 5.502 7 Si 0.711 3.289 8 H -0.205 1.205 9 H -0.216 1.216 10 H -0.186 1.186 11 C 0.093 3.907 12 C -0.192 4.192 13 C -0.098 4.098 14 C -0.061 4.061 15 C -0.122 4.122 16 C -0.214 4.214 17 C -0.145 4.145 18 C -0.020 4.020 19 O -0.232 6.232 20 H 0.063 0.937 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.151 0.849 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.276 -11.865 0.233 12.084 hybrid contribution -0.905 0.044 -0.714 1.154 sum -3.181 -11.821 -0.481 12.251 Atomic orbital electron populations 1.21843 0.83029 1.01039 1.00555 1.42394 1.02596 1.02665 1.69591 1.18958 1.11003 0.86168 1.28219 0.88036 1.25422 0.97647 0.94849 0.97168 1.69831 1.43895 0.98146 1.38338 0.86838 0.80140 0.79125 0.82762 1.20489 1.21593 1.18619 1.17916 0.91499 0.85777 0.95530 1.20399 0.92532 0.97176 1.09072 1.19882 0.98699 0.88713 1.02523 1.19053 0.91690 0.84799 1.10525 1.20217 0.93589 0.93787 1.04572 1.19538 0.98495 0.89752 1.13641 1.21706 0.98184 0.92319 1.02317 1.23567 0.85747 0.93260 0.99435 1.86699 1.38033 1.14359 1.84144 0.93664 0.91994 0.92934 0.91559 0.84854 0.86902 0.87132 0.90059 0.90099 0.91751 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.63 8.65 59.85 0.52 2.15 16 2 N -0.48 -11.46 2.69 -120.45 -0.32 -11.78 16 3 C -0.32 -8.45 8.93 -15.13 -0.14 -8.58 16 4 H 0.10 2.88 7.02 -52.49 -0.37 2.51 16 5 C 0.05 1.48 5.30 -17.45 -0.09 1.39 16 6 N -0.87 -24.44 13.97 55.49 0.78 -23.66 16 7 Si 0.88 20.66 24.93 -169.99 -4.24 16.42 16 8 H -0.28 -6.15 6.70 56.52 0.38 -5.78 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.20 4.59 6.52 -83.76 -0.55 4.04 16 12 C -0.17 -3.67 9.25 -39.43 -0.36 -4.03 16 13 C -0.08 -1.56 10.05 -39.33 -0.40 -1.96 16 14 C -0.01 -0.29 7.04 -38.85 -0.27 -0.56 16 15 C -0.12 -2.23 6.27 -104.10 -0.65 -2.88 16 16 C -0.19 -3.80 9.19 -39.50 -0.36 -4.16 16 17 C -0.11 -1.51 7.12 -26.51 -0.19 -1.70 16 18 C 0.06 0.74 8.01 38.05 0.30 1.04 16 19 O -0.32 -5.66 11.10 -20.39 -0.23 -5.88 16 20 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 21 H 0.06 1.34 3.45 -51.93 -0.18 1.16 16 22 H 0.05 0.96 6.49 -51.93 -0.34 0.63 16 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.13 2.97 6.46 -52.49 -0.34 2.63 16 25 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 26 H 0.11 2.00 6.27 -52.49 -0.33 1.67 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 246.70 15.07 3.72 3.72 Total: -1.00 -29.15 246.70 -5.73 -34.88 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.25 Total: 1.55 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.19 Total: -15.25 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.45 Total: -35.44 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.23 Total: -5.88 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.24 Total: 16.42 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.15 -5.73 -34.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258870038.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.270 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds