Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36831 * 120.00168 * 2 1 4 4 H 1.07997 * 120.00085 * 142.14079 * 3 2 1 5 5 C 1.38760 * 120.00049 * 322.14587 * 3 2 1 6 6 N 1.31618 * 120.00252 * 159.24286 * 5 3 2 7 7 Si 1.86797 * 119.99782 * 339.24233 * 5 3 2 8 8 H 1.48503 * 109.47240 * 95.71494 * 7 5 3 9 9 H 1.48501 * 109.47256 * 215.71914 * 7 5 3 10 10 H 1.48504 * 109.47323 * 335.71678 * 7 5 3 11 11 C 1.39401 * 119.99972 * 179.97438 * 2 1 3 12 12 C 1.39100 * 120.21021 * 179.97438 * 11 2 1 13 13 C 1.37772 * 120.25550 * 180.13249 * 12 11 2 14 14 C 1.39380 * 120.36395 * 0.05104 * 13 12 11 15 15 C 1.39059 * 119.00230 * 359.59828 * 14 13 12 16 16 C 1.37538 * 120.86326 * 0.56310 * 15 14 13 17 17 C 1.51666 * 106.98202 * 180.58204 * 15 14 13 18 18 C 1.54703 * 101.94035 * 15.73590 * 17 15 14 19 19 O 1.36205 * 129.77541 * 179.58805 * 14 13 12 20 20 H 1.09008 * 109.47028 * 265.02633 * 1 2 3 21 21 H 1.08999 * 109.47094 * 25.01623 * 1 2 3 22 22 H 1.08994 * 109.47483 * 145.02558 * 1 2 3 23 23 H 0.96994 * 119.99997 * 179.97438 * 6 5 3 24 24 H 1.07995 * 119.87002 * 0.15922 * 12 11 2 25 25 H 1.08002 * 119.82213 * 180.02562 * 13 12 11 26 26 H 1.08002 * 120.01782 * 179.61860 * 16 15 14 27 27 H 1.08991 * 110.94296 * 257.56403 * 17 15 14 28 28 H 1.08997 * 110.94323 * 133.90072 * 17 15 14 29 29 H 1.08994 * 110.75098 * 92.91029 * 18 17 15 30 30 H 1.09002 * 110.74155 * 216.06752 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.0587 1.2834 0.5740 5 6 1.6744 2.2603 -0.7374 6 7 2.0605 3.4832 -0.4412 7 14 0.4873 1.9721 -2.1506 8 1 -0.9061 2.1599 -1.6727 9 1 0.7713 2.9397 -3.2408 10 1 0.6529 0.5878 -2.6619 11 6 2.1620 -1.2073 0.0005 12 6 3.5530 -1.2124 0.0000 13 6 4.2428 -2.4050 -0.0022 14 6 3.5545 -3.6170 -0.0050 15 6 2.1640 -3.6027 0.0030 16 6 1.4706 -2.4149 0.0019 17 6 1.7062 -5.0486 0.0123 18 6 3.0009 -5.7916 0.4187 19 8 4.0345 -4.8916 -0.0150 20 1 -0.3633 -0.0891 1.0239 21 1 -0.3633 0.9313 -0.4346 22 1 -0.3634 -0.8420 -0.5890 23 1 1.7289 4.2347 -0.9569 24 1 4.0943 -0.2779 0.0018 25 1 5.3228 -2.4008 -0.0022 26 1 0.3906 -2.4198 0.0020 27 1 1.3739 -5.3584 -0.9784 28 1 0.9200 -5.2036 0.7511 29 1 3.0414 -5.9344 1.4985 30 1 3.0757 -6.7480 -0.0988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258870038.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = -1.836579 kcal Electronic energy + Delta-G solvation = -14514.402451 eV Core-core repulsion = 12081.999519 eV Total energy + Delta-G solvation = -2432.402933 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68230 -39.45096 -36.55293 -34.04520 -33.40845 -30.26074 -29.99349 -28.15494 -25.66825 -23.86123 -22.48153 -21.85629 -19.25035 -18.23827 -17.79515 -17.13566 -16.87684 -16.58767 -15.41501 -15.07736 -14.87248 -14.52715 -14.11436 -13.84748 -13.67902 -13.53980 -13.29291 -12.92333 -12.68002 -12.45300 -12.23182 -12.03359 -11.62604 -11.35333 -10.94591 -10.10283 -9.64109 -8.49313 -8.07608 -5.91968 0.57513 0.78661 1.20245 1.35120 1.43942 2.18816 2.61068 2.72525 2.94953 3.13548 3.67263 3.93014 4.13505 4.28992 4.30384 4.52213 4.53190 4.63926 4.70921 4.75138 4.86292 4.98491 5.04810 5.22820 5.32088 5.57075 5.65466 5.80911 5.84894 6.02975 6.50259 6.72876 7.28434 7.56419 8.66596 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.051196 B = 0.008087 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.785171 B = 3461.545542 C = 3749.165570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.503 5.503 3 C -0.315 4.315 4 H 0.062 0.938 5 C 0.006 3.994 6 N -0.916 5.916 7 Si 0.948 3.052 8 H -0.254 1.254 9 H -0.293 1.293 10 H -0.263 1.263 11 C 0.181 3.819 12 C -0.190 4.190 13 C -0.088 4.088 14 C -0.011 4.011 15 C -0.124 4.124 16 C -0.184 4.184 17 C -0.103 4.103 18 C 0.049 3.951 19 O -0.332 6.332 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.079 0.921 23 H 0.277 0.723 24 H 0.111 0.889 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 -15.676 -0.185 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.200 5.200 3 C -0.444 4.444 4 H 0.080 0.920 5 C -0.195 4.195 6 N -0.554 5.554 7 Si 0.773 3.227 8 H -0.180 1.180 9 H -0.220 1.220 10 H -0.188 1.188 11 C 0.072 3.928 12 C -0.213 4.213 13 C -0.108 4.108 14 C -0.057 4.057 15 C -0.126 4.126 16 C -0.208 4.208 17 C -0.140 4.140 18 C -0.026 4.026 19 O -0.248 6.248 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.097 0.903 23 H 0.086 0.914 24 H 0.129 0.871 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.019 -15.324 -0.263 15.844 hybrid contribution -0.223 0.805 -0.467 0.957 sum -4.242 -14.519 -0.730 15.144 Atomic orbital electron populations 1.21950 0.81142 1.01560 1.01941 1.42369 1.03703 1.01932 1.71991 1.18720 1.10284 0.87797 1.27572 0.92028 1.26078 0.99912 0.94339 0.99211 1.69930 1.46492 0.99057 1.39948 0.85823 0.79236 0.78428 0.79214 1.17954 1.22010 1.18768 1.18243 0.91826 0.86458 0.96234 1.20359 0.92953 0.97216 1.10786 1.20011 0.99632 0.88658 1.02465 1.19283 0.92393 0.85445 1.08596 1.20779 0.93377 0.95920 1.02496 1.19785 0.99695 0.89105 1.12209 1.21859 0.99214 0.88510 1.04367 1.23992 0.83996 0.93555 1.01038 1.86694 1.40025 1.13819 1.84221 0.92246 0.93033 0.90267 0.91376 0.87110 0.85437 0.84822 0.88201 0.87352 0.90225 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.04 8.65 127.77 1.11 4.15 16 2 N -0.50 -24.22 2.69 -535.01 -1.44 -25.66 16 3 C -0.32 -17.63 8.93 84.04 0.75 -16.87 16 4 H 0.06 3.80 7.02 -2.91 -0.02 3.78 16 5 C 0.01 0.32 5.30 84.85 0.45 0.77 16 6 N -0.92 -53.86 13.97 21.64 0.30 -53.56 16 7 Si 0.95 43.03 24.93 68.60 1.71 44.74 16 8 H -0.25 -10.45 6.70 99.48 0.67 -9.78 16 9 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 C 0.18 8.11 6.52 38.37 0.25 8.36 16 12 C -0.19 -8.52 9.25 22.37 0.21 -8.31 16 13 C -0.09 -3.49 10.05 22.43 0.23 -3.27 16 14 C -0.01 -0.40 7.04 22.74 0.16 -0.24 16 15 C -0.12 -4.19 6.27 -19.52 -0.12 -4.31 16 16 C -0.18 -6.90 9.19 22.33 0.21 -6.70 16 17 C -0.10 -2.31 7.12 30.74 0.22 -2.10 16 18 C 0.05 1.04 8.01 72.56 0.58 1.63 16 19 O -0.33 -10.72 11.10 -95.88 -1.06 -11.78 16 20 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 21 H 0.05 2.14 3.45 -2.39 -0.01 2.13 16 22 H 0.08 2.66 6.49 -2.39 -0.02 2.64 16 23 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.11 5.37 6.46 -2.91 -0.02 5.35 16 25 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 26 H 0.13 4.32 6.27 -2.91 -0.02 4.30 16 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -65.06 246.70 4.65 -60.41 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.11 Total: 12.74 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 4.03 Total: -26.89 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -1.14 Total: -79.22 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.06 Total: -11.78 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.71 Total: 44.74 kcal Total: -65.06 4.65 -60.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258870038.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.574 kcal (2) G-P(sol) polarization free energy of solvation -65.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds