Wall clock time and date at job start Mon Mar 30 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48493 * 109.47381 * 240.00412 * 3 2 1 5 5 H 1.48501 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47282 * 119.99992 * 3 2 1 7 7 C 1.38831 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36989 * 119.99609 * 359.97438 * 7 2 1 10 10 C 1.38445 * 119.99691 * 180.02562 * 9 7 2 11 11 N 1.32532 * 119.21723 * 0.02562 * 10 9 7 12 12 C 1.32227 * 120.74500 * 179.97438 * 11 10 9 13 13 C 1.38665 * 119.19404 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.72044 * 179.97438 * 13 12 11 15 15 C 1.53788 * 113.61198 * 219.13721 * 14 13 12 16 16 C 1.53958 * 87.01570 * 220.04730 * 15 14 13 17 17 C 1.53777 * 87.11354 * 25.36195 * 16 15 14 18 18 C 1.38653 * 118.55409 * 359.97438 * 13 12 11 19 19 N 1.32237 * 119.20014 * 0.02562 * 18 13 12 20 20 H 0.97000 * 119.99421 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00248 * 359.97438 * 9 7 2 22 22 H 1.07997 * 120.40488 * 180.27668 * 12 11 10 23 23 H 1.08999 * 112.84901 * 350.32597 * 14 13 12 24 24 H 1.08998 * 113.61245 * 334.56141 * 15 14 13 25 25 H 1.08994 * 113.61347 * 105.46965 * 15 14 13 26 26 H 1.08996 * 113.53636 * 270.80742 * 16 15 14 27 27 H 1.09001 * 113.66161 * 139.93178 * 16 15 14 28 28 H 1.09004 * 113.61769 * 220.09109 * 17 16 15 29 29 H 1.09005 * 113.69170 * 89.19590 * 17 16 15 30 30 H 1.08005 * 120.39907 * 180.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0096 -1.2023 -0.0005 8 1 3.0895 -1.2024 -0.0010 9 7 1.3246 -2.3886 -0.0005 10 6 2.0168 -3.5876 -0.0005 11 7 3.3420 -3.5696 0.0000 12 6 4.0334 -4.6967 0.0005 13 6 3.3552 -5.9062 0.0000 14 6 4.1087 -7.2113 0.0000 15 6 3.4705 -8.2910 -0.8899 16 6 3.8185 -9.2983 0.2212 17 6 3.7781 -8.1135 1.2006 18 6 1.9688 -5.8886 -0.0006 19 7 1.3383 -4.7262 -0.0011 20 1 -0.4849 0.8401 0.0004 21 1 0.3546 -2.3886 0.0002 22 1 5.1131 -4.6755 0.0054 23 1 5.1779 -7.0827 -0.1684 24 1 2.3989 -8.1573 -1.0381 25 1 4.0094 -8.4636 -1.8215 26 1 4.8083 -9.7415 0.1125 27 1 3.0391 -10.0391 0.3998 28 1 4.5651 -8.1429 1.9543 29 1 2.7914 -7.9301 1.6259 30 1 1.4105 -6.8132 -0.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259292117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:15 Heat of formation + Delta-G solvation = 50.567730 kcal Electronic energy + Delta-G solvation = -14035.389509 eV Core-core repulsion = 11637.551749 eV Total energy + Delta-G solvation = -2397.837760 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.61274 -39.33125 -37.02934 -34.20029 -33.86978 -31.31909 -27.34346 -26.33252 -25.52786 -25.09678 -22.89021 -20.40488 -19.62350 -18.91671 -17.69737 -16.77458 -16.26471 -15.90246 -15.71057 -15.39708 -15.06830 -14.04343 -13.62597 -13.46610 -13.39845 -13.17606 -12.93259 -12.52964 -12.18623 -12.09438 -12.02849 -11.51854 -11.20771 -11.16508 -10.88707 -10.57885 -9.60239 -8.96677 -8.52456 -5.83204 0.54231 0.67962 1.41136 1.50068 1.53882 2.22788 2.83050 2.87579 3.44005 3.73058 3.90711 3.99239 4.02766 4.08028 4.31288 4.38250 4.62854 4.74032 4.99383 4.99816 5.03404 5.18635 5.23753 5.26598 5.36081 5.55105 5.67812 5.79637 6.01333 6.55796 6.69358 7.15686 7.37275 7.99451 8.65745 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.075156 B = 0.005827 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.466911 B = 4804.371384 C = 5042.030616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.027 4.027 3 Si 1.009 2.991 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.535 5.535 10 C 0.486 3.514 11 N -0.604 5.604 12 C 0.184 3.816 13 C -0.290 4.290 14 C -0.041 4.041 15 C -0.138 4.138 16 C -0.130 4.130 17 C -0.136 4.136 18 C 0.190 3.810 19 N -0.622 5.622 20 H 0.278 0.722 21 H 0.401 0.599 22 H 0.179 0.821 23 H 0.105 0.895 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.246 -13.895 0.146 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.227 4.227 3 Si 0.831 3.169 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.437 4.437 8 H 0.123 0.877 9 N -0.149 5.149 10 C 0.131 3.869 11 N -0.329 5.329 12 C 0.014 3.986 13 C -0.302 4.302 14 C -0.061 4.061 15 C -0.176 4.176 16 C -0.167 4.167 17 C -0.174 4.174 18 C 0.021 3.979 19 N -0.348 5.348 20 H 0.088 0.912 21 H 0.236 0.764 22 H 0.196 0.804 23 H 0.123 0.877 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.565 -12.492 0.145 14.605 hybrid contribution -0.095 0.235 0.009 0.254 sum 7.470 -12.257 0.154 14.355 Atomic orbital electron populations 1.69792 1.07425 1.29618 1.49775 1.26328 0.96635 1.03112 0.96631 0.84745 0.77428 0.75380 0.79331 1.19088 1.20025 1.19101 1.20009 0.93495 0.82358 1.47847 0.87675 1.40519 1.07887 1.01352 1.65124 1.19467 0.86260 0.86393 0.94789 1.67879 1.07087 1.32828 1.25131 1.23246 1.00658 0.86634 0.88032 1.20942 0.95252 0.97204 1.16801 1.21145 0.98941 0.88317 0.97653 1.23084 1.00817 0.95816 0.97845 1.22812 1.02579 0.95925 0.95397 1.23018 1.01657 0.96172 0.96520 1.22922 0.92355 0.94343 0.88323 1.67818 1.41810 0.98608 1.26550 0.91235 0.76391 0.80364 0.87661 0.90738 0.90952 0.88921 0.90889 0.91030 0.91277 0.80834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.48 13.05 21.65 0.28 -52.20 16 2 C -0.03 -1.48 5.50 84.88 0.47 -1.02 16 3 Si 1.01 42.76 29.55 68.60 2.03 44.78 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.31 -17.39 9.69 84.03 0.81 -16.58 16 8 H 0.11 5.96 7.05 -2.92 -0.02 5.94 16 9 N -0.53 -30.05 5.43 -194.35 -1.05 -31.11 16 10 C 0.49 25.07 8.38 261.43 2.19 27.26 16 11 N -0.60 -28.88 9.10 -197.88 -1.80 -30.68 16 12 C 0.18 6.79 11.01 84.74 0.93 7.72 16 13 C -0.29 -9.31 5.31 -19.66 -0.10 -9.41 16 14 C -0.04 -0.91 4.00 -11.01 -0.04 -0.96 16 15 C -0.14 -2.64 7.49 31.18 0.23 -2.40 16 16 C -0.13 -2.02 8.09 31.18 0.25 -1.77 16 17 C -0.14 -2.65 7.55 31.12 0.24 -2.42 16 18 C 0.19 6.88 9.85 84.73 0.83 7.72 16 19 N -0.62 -28.88 10.46 -197.88 -2.07 -30.95 16 20 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 21 H 0.40 23.13 8.01 -92.71 -0.74 22.39 16 22 H 0.18 5.08 8.06 -2.91 -0.02 5.05 16 23 H 0.11 2.01 8.11 -2.39 -0.02 1.99 16 24 H 0.07 1.52 6.47 -2.39 -0.02 1.51 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.50 7.70 -2.38 -0.02 1.48 16 30 H 0.17 4.99 6.86 -2.91 -0.02 4.97 16 Total: -1.00 -64.58 258.92 3.61 -60.97 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.41 Total: 31.04 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.81 Total: 8.15 kcal Atomic # 7 Polarization: -140.30 SS G_CDS: -4.64 Total: -144.94 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -64.58 3.61 -60.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259292117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.535 kcal (2) G-P(sol) polarization free energy of solvation -64.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds