Wall clock time and date at job start Mon Mar 30 2020 02:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48491 * 109.47042 * 270.00120 * 3 2 1 5 5 H 1.48500 * 109.46899 * 29.99693 * 3 2 1 6 6 H 1.48492 * 109.47235 * 149.99797 * 3 2 1 7 7 C 1.37879 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00346 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99712 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47051 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47262 * 179.97438 * 10 9 7 12 12 C 1.48121 * 111.00203 * 175.05503 * 11 10 9 13 13 C 1.50860 * 105.65971 * 146.76925 * 12 11 10 14 14 C 1.38256 * 132.92185 * 162.35746 * 13 12 11 15 15 N 1.32464 * 118.85267 * 179.80783 * 14 13 12 16 16 C 1.31817 * 120.83235 * 0.52627 * 15 14 13 17 17 N 1.31884 * 121.88339 * 359.72624 * 16 15 14 18 18 C 1.32120 * 120.62568 * 359.97438 * 17 16 15 19 19 C 1.48103 * 110.99983 * 290.13376 * 11 10 9 20 20 H 0.96998 * 119.99629 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47449 * 60.00385 * 9 7 2 22 22 H 1.09003 * 109.47206 * 300.00036 * 9 7 2 23 23 H 1.09006 * 109.46756 * 60.00504 * 10 9 7 24 24 H 1.08989 * 109.47513 * 299.99982 * 10 9 7 25 25 H 1.08997 * 110.20787 * 27.72530 * 12 11 10 26 26 H 1.09000 * 110.21303 * 265.82089 * 12 11 10 27 27 H 1.07997 * 120.56999 * 0.31964 * 14 13 12 28 28 H 1.07998 * 119.05734 * 179.74719 * 16 15 14 29 29 H 1.09003 * 110.20423 * 94.14903 * 19 11 10 30 30 H 1.08999 * 110.20272 * 332.25836 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0023 11 7 5.4905 -2.6367 0.0022 12 6 6.0213 -4.0143 0.1225 13 6 7.3016 -4.0285 -0.6753 14 6 8.3871 -4.8844 -0.6984 15 7 9.3847 -4.6292 -1.5318 16 6 9.3530 -3.5733 -2.3202 17 7 8.3358 -2.7340 -2.3200 18 6 7.3030 -2.9284 -1.5193 19 6 6.0212 -2.1619 -1.2963 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6802 0.8912 22 1 3.8752 -0.6805 -0.8889 23 1 3.6585 -3.1510 -0.8876 24 1 3.6578 -3.1499 0.8924 25 1 5.3109 -4.7291 -0.2927 26 1 6.2259 -4.2492 1.1671 27 1 8.4174 -5.7506 -0.0541 28 1 10.1838 -3.3905 -2.9856 29 1 6.2253 -1.0921 -1.2511 30 1 5.3109 -2.3769 -2.0946 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259395759.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:50 Heat of formation + Delta-G solvation = 61.737765 kcal Electronic energy + Delta-G solvation = -14066.272134 eV Core-core repulsion = 11668.918743 eV Total energy + Delta-G solvation = -2397.353391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.51631 -38.16748 -33.94836 -33.58959 -32.08034 -29.69256 -28.48391 -26.08545 -23.54005 -22.99579 -21.65502 -20.19308 -17.82257 -17.10682 -16.69631 -15.74468 -15.27709 -14.50991 -14.30328 -13.94392 -13.53468 -13.37466 -13.13602 -12.68085 -12.35730 -12.20880 -11.51927 -11.02161 -11.00822 -10.70416 -10.12282 -10.00729 -9.86284 -9.54080 -9.31169 -9.26603 -8.58033 -8.24887 -6.09249 -4.08588 0.76063 0.92847 3.29756 3.37793 3.42967 3.55412 3.62414 3.95180 4.15520 4.34124 4.42451 4.57603 4.80211 5.22820 5.25427 5.40585 5.49147 5.55512 5.74101 5.79507 5.94187 6.05400 6.24393 6.56751 6.79234 6.88210 6.92080 7.27269 7.43786 7.74413 7.94610 8.45737 8.93696 9.52777 11.03874 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.057769 B = 0.006053 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.574867 B = 4624.488952 C = 4953.717472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.008 4.008 10 C 0.059 3.941 11 N -0.503 5.503 12 C 0.081 3.919 13 C -0.207 4.207 14 C 0.161 3.839 15 N -0.522 5.522 16 C 0.291 3.709 17 N -0.509 5.509 18 C 0.171 3.829 19 C 0.082 3.918 20 H 0.264 0.736 21 H 0.028 0.972 22 H 0.012 0.988 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.168 0.832 28 H 0.198 0.802 29 H 0.107 0.893 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.435 -8.005 -1.944 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.045 4.045 10 C -0.067 4.067 11 N -0.227 5.227 12 C -0.048 4.048 13 C -0.212 4.212 14 C -0.004 4.004 15 N -0.235 5.235 16 C 0.003 3.997 17 N -0.223 5.223 18 C 0.023 3.977 19 C -0.046 4.046 20 H 0.074 0.926 21 H 0.046 0.954 22 H 0.030 0.970 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.185 0.815 28 H 0.215 0.785 29 H 0.125 0.875 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.189 -7.380 -2.103 17.916 hybrid contribution -0.583 0.226 -0.193 0.654 sum 15.606 -7.154 -2.295 17.320 Atomic orbital electron populations 1.69910 1.06337 1.27029 1.50787 1.24982 0.94707 0.99192 0.94324 0.86785 0.80549 0.83483 0.78599 1.20274 1.21347 1.18690 1.21032 0.89189 0.94592 1.51511 0.91027 1.19556 0.96714 0.91140 0.97131 1.22485 0.82170 1.01288 1.00780 1.65539 1.11893 1.16721 1.28554 1.21538 0.90850 0.92302 1.00129 1.22385 0.99108 0.98525 1.01196 1.22543 0.86972 0.97136 0.93711 1.68509 1.27815 1.20375 1.06848 1.24956 0.94952 0.85528 0.94262 1.67622 1.01209 1.30939 1.22568 1.22358 0.93781 0.92917 0.88646 1.21708 0.89550 1.00707 0.92660 0.92636 0.95418 0.96963 0.94562 0.90375 0.91394 0.88500 0.81508 0.78528 0.87483 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 8 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 9 C -0.01 -0.18 4.10 -27.88 -0.11 -0.29 16 10 C 0.06 1.11 4.57 -3.82 -0.02 1.09 16 11 N -0.50 -8.16 5.47 -235.11 -1.29 -9.45 16 12 C 0.08 1.04 6.61 -4.22 -0.03 1.01 16 13 C -0.21 -2.69 6.33 -104.38 -0.66 -3.35 16 14 C 0.16 1.83 11.31 -17.27 -0.20 1.63 16 15 N -0.52 -6.43 10.44 -14.62 -0.15 -6.59 16 16 C 0.29 3.51 12.28 -92.06 -1.13 2.38 16 17 N -0.51 -7.33 10.44 -10.71 -0.11 -7.45 16 18 C 0.17 2.52 7.50 -82.17 -0.62 1.91 16 19 C 0.08 1.28 5.70 -4.17 -0.02 1.25 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 22 H 0.01 0.28 6.94 -51.93 -0.36 -0.08 16 23 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 24 H 0.08 1.43 8.13 -51.94 -0.42 1.00 16 25 H 0.07 0.82 7.81 -51.93 -0.41 0.41 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 30 H 0.08 1.26 7.61 -51.93 -0.40 0.87 16 LS Contribution 256.28 15.07 3.86 3.86 Total: -1.00 -31.31 256.28 -8.44 -39.75 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -3.64 Total: -2.99 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.22 Total: -7.31 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.78 Total: -50.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.31 -8.44 -39.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395759.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.490 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds