Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48491 * 109.47042 * 270.00120 * 3 2 1 5 5 H 1.48500 * 109.46899 * 29.99693 * 3 2 1 6 6 H 1.48492 * 109.47235 * 149.99797 * 3 2 1 7 7 C 1.37879 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00346 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99712 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47051 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47262 * 179.97438 * 10 9 7 12 12 C 1.48121 * 111.00203 * 175.05503 * 11 10 9 13 13 C 1.50860 * 105.65971 * 146.76925 * 12 11 10 14 14 C 1.38256 * 132.92185 * 162.35746 * 13 12 11 15 15 N 1.32464 * 118.85267 * 179.80783 * 14 13 12 16 16 C 1.31817 * 120.83235 * 0.52627 * 15 14 13 17 17 N 1.31884 * 121.88339 * 359.72624 * 16 15 14 18 18 C 1.32120 * 120.62568 * 359.97438 * 17 16 15 19 19 C 1.48103 * 110.99983 * 290.13376 * 11 10 9 20 20 H 0.96998 * 119.99629 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47449 * 60.00385 * 9 7 2 22 22 H 1.09003 * 109.47206 * 300.00036 * 9 7 2 23 23 H 1.09006 * 109.46756 * 60.00504 * 10 9 7 24 24 H 1.08989 * 109.47513 * 299.99982 * 10 9 7 25 25 H 1.08997 * 110.20787 * 27.72530 * 12 11 10 26 26 H 1.09000 * 110.21303 * 265.82089 * 12 11 10 27 27 H 1.07997 * 120.56999 * 0.31964 * 14 13 12 28 28 H 1.07998 * 119.05734 * 179.74719 * 16 15 14 29 29 H 1.09003 * 110.20423 * 94.14903 * 19 11 10 30 30 H 1.08999 * 110.20272 * 332.25836 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0023 11 7 5.4905 -2.6367 0.0022 12 6 6.0213 -4.0143 0.1225 13 6 7.3016 -4.0285 -0.6753 14 6 8.3871 -4.8844 -0.6984 15 7 9.3847 -4.6292 -1.5318 16 6 9.3530 -3.5733 -2.3202 17 7 8.3358 -2.7340 -2.3200 18 6 7.3030 -2.9284 -1.5193 19 6 6.0212 -2.1619 -1.2963 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6802 0.8912 22 1 3.8752 -0.6805 -0.8889 23 1 3.6585 -3.1510 -0.8876 24 1 3.6578 -3.1499 0.8924 25 1 5.3109 -4.7291 -0.2927 26 1 6.2259 -4.2492 1.1671 27 1 8.4174 -5.7506 -0.0541 28 1 10.1838 -3.3905 -2.9856 29 1 6.2253 -1.0921 -1.2511 30 1 5.3109 -2.3769 -2.0946 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259395759.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = 39.774943 kcal Electronic energy + Delta-G solvation = -14067.224514 eV Core-core repulsion = 11668.918743 eV Total energy + Delta-G solvation = -2398.305771 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.51042 -39.34011 -35.55344 -34.77723 -33.73083 -31.25385 -29.57988 -27.52046 -25.00599 -24.00847 -22.90391 -21.79536 -19.15059 -18.58100 -17.97648 -16.89246 -16.51638 -16.24430 -15.50274 -15.27581 -14.76289 -14.61776 -14.46977 -14.25904 -13.75544 -13.53448 -13.22619 -12.81768 -12.06654 -11.89714 -11.82348 -11.66737 -11.62017 -11.42138 -10.76229 -10.59500 -10.28094 -9.46074 -8.29422 -6.33444 -0.20455 -0.02455 1.36982 1.39407 1.51546 2.36801 2.48862 2.66972 2.93737 3.06894 3.13719 3.40628 3.61909 3.77573 4.19578 4.33631 4.39307 4.44099 4.57011 4.63834 4.66079 4.85727 4.93702 5.24215 5.32747 5.36086 5.61664 5.68883 5.86630 5.94707 6.27074 6.74540 7.00100 7.31783 8.86989 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.057769 B = 0.006053 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.574867 B = 4624.488952 C = 4953.717472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.531 4.531 8 H 0.038 0.962 9 C -0.003 4.003 10 C 0.073 3.927 11 N -0.512 5.512 12 C 0.084 3.916 13 C -0.210 4.210 14 C 0.171 3.829 15 N -0.529 5.529 16 C 0.289 3.711 17 N -0.532 5.532 18 C 0.149 3.851 19 C 0.082 3.918 20 H 0.266 0.734 21 H 0.024 0.976 22 H 0.016 0.984 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.205 0.795 28 H 0.229 0.771 29 H 0.098 0.902 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.774 -8.499 -1.748 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.041 4.041 10 C -0.054 4.054 11 N -0.236 5.236 12 C -0.044 4.044 13 C -0.215 4.215 14 C 0.006 3.994 15 N -0.242 5.242 16 C 0.002 3.998 17 N -0.246 5.246 18 C 0.002 3.998 19 C -0.047 4.047 20 H 0.075 0.925 21 H 0.042 0.958 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.135 0.865 27 H 0.222 0.778 28 H 0.246 0.754 29 H 0.116 0.884 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.550 -7.886 -1.910 20.247 hybrid contribution -1.285 0.272 -0.269 1.341 sum 17.265 -7.614 -2.179 18.995 Atomic orbital electron populations 1.70053 1.08212 1.28155 1.52592 1.25906 0.95498 1.03255 0.94107 0.85725 0.79593 0.78637 0.79144 1.19307 1.21032 1.17147 1.21391 0.91740 0.93336 1.50479 0.94356 1.19437 0.93568 0.94199 0.96906 1.22151 0.84049 0.98304 1.00907 1.65420 1.09912 1.19307 1.28986 1.21589 0.90928 0.90427 1.01496 1.22421 0.99641 0.98481 1.00951 1.23137 0.85693 0.97427 0.93178 1.68630 1.28077 1.20383 1.07134 1.25624 0.94988 0.84900 0.94272 1.67627 1.01782 1.32085 1.23153 1.22242 0.93814 0.93821 0.89931 1.21605 0.90345 1.00479 0.92260 0.92470 0.95809 0.96520 0.94700 0.90106 0.90329 0.86477 0.77826 0.75450 0.88415 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 2 C 0.01 0.55 5.47 84.65 0.46 1.01 16 3 Si 0.95 44.14 27.47 68.60 1.88 46.03 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.53 -29.82 9.66 25.60 0.25 -29.58 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 9 C 0.00 -0.15 4.10 29.85 0.12 -0.03 16 10 C 0.07 2.68 4.57 86.30 0.39 3.07 16 11 N -0.51 -15.89 5.47 -897.76 -4.91 -20.80 16 12 C 0.08 1.95 6.61 85.37 0.56 2.51 16 13 C -0.21 -4.93 6.33 -19.71 -0.12 -5.06 16 14 C 0.17 3.30 11.31 84.60 0.96 4.26 16 15 N -0.53 -11.45 10.44 -200.15 -2.09 -13.54 16 16 C 0.29 6.30 12.28 180.85 2.22 8.52 16 17 N -0.53 -14.52 10.44 -187.79 -1.96 -16.48 16 18 C 0.15 4.19 7.50 42.71 0.32 4.52 16 19 C 0.08 2.48 5.70 85.42 0.49 2.97 16 20 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 21 H 0.02 1.10 7.20 -2.38 -0.02 1.08 16 22 H 0.02 0.74 6.94 -2.39 -0.02 0.72 16 23 H 0.03 1.27 7.82 -2.38 -0.02 1.25 16 24 H 0.08 2.89 8.13 -2.39 -0.02 2.87 16 25 H 0.08 1.69 7.81 -2.39 -0.02 1.67 16 26 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.23 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.08 2.35 7.61 -2.39 -0.02 2.33 16 Total: -1.00 -67.52 256.28 -0.05 -67.58 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.08 Total: 3.64 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.65 Total: -7.81 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -8.67 Total: -109.44 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -67.52 -0.05 -67.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395759.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.352 kcal (2) G-P(sol) polarization free energy of solvation -67.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds