Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 119.99637 * 2 1 4 4 H 1.48502 * 109.47032 * 239.99943 * 3 2 1 5 5 H 1.48500 * 109.46920 * 120.00364 * 3 2 1 6 6 H 1.48497 * 109.47060 * 0.02562 * 3 2 1 7 7 C 1.37878 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99963 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.87813 * 331.49501 * 9 7 2 11 11 C 1.54314 * 109.89212 * 210.29271 * 9 7 2 12 12 C 1.55134 * 103.02338 * 218.31255 * 11 9 7 13 13 C 1.54910 * 101.65439 * 35.65257 * 12 11 9 14 14 N 1.47444 * 109.88718 * 92.52405 * 9 7 2 15 15 C 1.39738 * 111.00348 * 356.15299 * 14 9 7 16 16 C 1.39278 * 120.87042 * 248.30871 * 15 14 9 17 17 N 1.32268 * 119.00408 * 179.71456 * 16 15 14 18 18 C 1.31789 * 120.89794 * 0.56485 * 17 16 15 19 19 N 1.31790 * 121.93610 * 359.70097 * 18 17 16 20 20 C 1.32265 * 120.89652 * 0.02562 * 19 18 17 21 21 H 0.97008 * 119.99378 * 180.02562 * 1 2 3 22 22 H 1.09002 * 110.70815 * 336.69710 * 11 9 7 23 23 H 1.09007 * 110.70496 * 99.92718 * 11 9 7 24 24 H 1.09008 * 110.98958 * 277.56045 * 12 11 9 25 25 H 1.09000 * 110.99332 * 153.74893 * 12 11 9 26 26 H 1.08994 * 110.37281 * 204.10448 * 13 12 11 27 27 H 1.09002 * 110.46466 * 81.80745 * 13 12 11 28 28 H 1.07999 * 120.49472 * 359.96240 * 16 15 14 29 29 H 1.08008 * 119.03265 * 179.68492 * 18 17 16 30 30 H 1.07998 * 120.49150 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2839 2.7465 0.0006 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 1 0.2859 -2.3694 0.4912 11 6 2.0741 -3.5797 0.7341 12 6 1.8102 -4.8532 -0.1118 13 6 1.7338 -4.2674 -1.5438 14 7 1.0528 -2.9650 -1.3831 15 6 1.5383 -2.0295 -2.3006 16 6 0.6690 -1.3208 -3.1264 17 7 1.1681 -0.4400 -3.9776 18 6 2.4679 -0.2377 -4.0577 19 7 3.3233 -0.8917 -3.2979 20 6 2.9044 -1.7856 -2.4175 21 1 -0.4849 -0.8402 0.0004 22 1 3.1343 -3.3264 0.7287 23 1 1.7138 -3.7131 1.7542 24 1 0.8664 -5.3203 0.1698 25 1 2.6356 -5.5594 -0.0223 26 1 1.1515 -4.9228 -2.1913 27 1 2.7348 -4.1245 -1.9510 28 1 -0.3969 -1.4851 -3.0697 29 1 2.8432 0.4852 -4.7670 30 1 3.6112 -2.3181 -1.7985 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259611193.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = 56.124151 kcal Electronic energy + Delta-G solvation = -15381.859799 eV Core-core repulsion = 12984.262983 eV Total energy + Delta-G solvation = -2397.596816 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.36930 -38.04680 -33.02410 -32.74854 -32.19659 -28.33478 -28.14205 -24.52084 -23.37056 -22.95578 -20.49768 -20.02905 -17.40663 -16.69287 -16.66132 -15.22618 -15.05575 -13.93418 -13.77993 -13.45154 -12.88592 -12.81301 -12.62915 -12.25086 -11.63396 -11.41401 -10.87580 -10.63310 -10.56350 -10.35625 -10.23579 -9.88955 -9.80389 -9.10145 -8.69963 -8.49894 -8.12835 -7.37911 -6.56957 -4.33374 1.88310 2.04165 3.32065 3.38229 3.52901 4.36405 4.59300 4.72254 4.99478 5.13216 5.23225 5.39714 5.47165 5.59323 5.64844 5.96360 6.01535 6.15524 6.21797 6.32118 6.45344 6.58314 6.64445 6.84830 7.09596 7.27483 7.59993 7.83429 7.87082 8.18287 8.35234 8.63454 8.96680 9.38073 10.79356 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.017459 C = 0.012332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.653546 B = 1603.333761 C = 2269.922218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 1.046 2.954 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.615 4.615 8 H 0.053 0.947 9 C 0.180 3.820 10 H 0.061 0.939 11 C -0.126 4.126 12 C -0.131 4.131 13 C 0.044 3.956 14 N -0.505 5.505 15 C 0.077 3.923 16 C 0.145 3.855 17 N -0.522 5.522 18 C 0.254 3.746 19 N -0.531 5.531 20 C 0.148 3.852 21 H 0.277 0.723 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.154 0.846 29 H 0.179 0.821 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 -5.913 -2.783 7.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.169 4.169 3 Si 0.874 3.126 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.655 4.655 8 H 0.071 0.929 9 C 0.077 3.923 10 H 0.078 0.922 11 C -0.165 4.165 12 C -0.169 4.169 13 C -0.083 4.083 14 N -0.229 5.229 15 C -0.021 4.021 16 C -0.019 4.019 17 N -0.236 5.236 18 C -0.034 4.034 19 N -0.247 5.247 20 C -0.020 4.020 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.172 0.828 29 H 0.196 0.804 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.864 -3.663 -3.519 5.832 hybrid contribution 0.775 -2.010 0.989 2.371 sum 3.639 -5.673 -2.530 7.200 Atomic orbital electron populations 1.70792 1.06807 1.31415 1.42465 1.25686 0.96351 1.02316 0.92558 0.83836 0.75536 0.76070 0.77193 1.20735 1.21092 1.20441 1.22181 0.94223 0.91709 1.57347 0.92913 1.20228 0.96412 0.92770 0.82856 0.92161 1.22814 1.00697 0.94397 0.98557 1.22693 1.00950 0.97802 0.95475 1.23018 0.96640 0.91554 0.97092 1.61898 1.54343 1.00783 1.05840 1.20091 0.92995 0.95753 0.93286 1.22790 1.00039 0.89361 0.89714 1.68212 1.15933 1.17004 1.22471 1.24406 0.85521 0.96922 0.96504 1.68135 1.40895 1.08582 1.07039 1.23368 0.94894 0.92210 0.91506 0.91100 0.92219 0.92321 0.91451 0.92036 0.91620 0.94212 0.82839 0.80418 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 13.63 55.43 0.76 -24.11 16 2 C 0.04 1.10 5.12 -17.82 -0.09 1.01 16 3 Si 1.05 25.24 29.90 -169.99 -5.08 20.16 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.62 -15.59 5.08 -34.44 -0.18 -15.76 16 8 H 0.05 1.37 6.83 -52.48 -0.36 1.02 16 9 C 0.18 4.08 3.18 -67.88 -0.22 3.86 16 10 H 0.06 1.52 6.46 -51.93 -0.34 1.18 16 11 C -0.13 -2.39 6.46 -24.91 -0.16 -2.55 16 12 C -0.13 -2.08 7.08 -24.59 -0.17 -2.26 16 13 C 0.04 0.76 6.54 -2.29 -0.02 0.75 16 14 N -0.50 -10.59 5.19 -161.51 -0.84 -11.43 16 15 C 0.08 1.69 3.50 -83.49 -0.29 1.39 16 16 C 0.15 3.20 11.26 -16.98 -0.19 3.01 16 17 N -0.52 -11.26 10.43 -14.42 -0.15 -11.41 16 18 C 0.25 5.17 12.27 -92.16 -1.13 4.04 16 19 N -0.53 -11.36 10.43 -14.43 -0.15 -11.51 16 20 C 0.15 3.19 7.65 -16.98 -0.13 3.06 16 21 H 0.28 7.78 6.55 -40.82 -0.27 7.51 16 22 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.68 6.27 -51.93 -0.33 0.35 16 28 H 0.15 3.27 8.06 -52.49 -0.42 2.84 16 29 H 0.18 2.93 8.06 -52.48 -0.42 2.51 16 30 H 0.15 3.04 6.93 -52.49 -0.36 2.67 16 LS Contribution 248.49 15.07 3.74 3.74 Total: -1.00 -28.19 248.49 -7.68 -35.87 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.38 Total: 2.13 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.58 Total: -3.45 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.38 Total: -58.45 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.19 -7.68 -35.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611193.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.996 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds