Wall clock time and date at job start Mon Mar 30 2020 02:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36901 * 124.78025 * 2 1 4 4 C 1.34910 * 109.25066 * 179.78771 * 3 2 1 5 5 C 1.45203 * 105.91988 * 0.27313 * 4 3 2 6 6 C 1.33674 * 124.78119 * 180.19716 * 2 1 3 7 7 C 1.50718 * 129.57653 * 359.79786 * 6 2 1 8 8 C 1.53151 * 109.23502 * 200.86910 * 7 6 2 9 9 H 1.09005 * 109.22321 * 67.65063 * 8 7 6 10 10 C 1.50704 * 109.19077 * 187.02188 * 8 7 6 11 11 H 1.07999 * 119.99750 * 1.23240 * 10 8 7 12 12 C 1.37877 * 119.99922 * 181.22426 * 10 8 7 13 13 N 1.31513 * 119.99954 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99775 * 180.02562 * 12 10 8 15 15 H 1.48491 * 109.47340 * 60.00284 * 14 12 10 16 16 H 1.48501 * 109.47126 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47049 * 300.00413 * 14 12 10 18 18 C 1.53202 * 110.73908 * 307.32504 * 8 7 6 19 19 C 1.46666 * 131.28345 * 179.80359 * 5 4 3 20 20 O 1.21345 * 122.46788 * 11.41205 * 19 5 4 21 21 H 1.09007 * 109.47470 * 90.01991 * 1 2 3 22 22 H 1.09004 * 109.47148 * 210.01871 * 1 2 3 23 23 H 1.08998 * 109.47341 * 330.01953 * 1 2 3 24 24 H 1.08002 * 125.37762 * 0.06244 * 3 2 1 25 25 H 1.08000 * 127.03776 * 180.26303 * 4 3 2 26 26 H 1.09006 * 109.50603 * 80.94013 * 7 6 2 27 27 H 1.08998 * 109.54969 * 320.82483 * 7 6 2 28 28 H 0.97000 * 119.99729 * 179.97438 * 13 12 10 29 29 H 1.08993 * 109.68083 * 304.98971 * 18 8 7 30 30 H 1.09001 * 109.67965 * 184.43490 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2459 1.1244 0.0000 4 6 3.5458 0.7632 0.0047 5 6 3.5557 -0.6888 0.0012 6 6 2.2275 -1.0979 -0.0038 7 6 1.8211 -2.5493 -0.0047 8 6 2.9877 -3.4002 0.5059 9 1 3.1529 -3.1861 1.5618 10 6 2.6454 -4.8588 0.3430 11 1 1.7028 -5.1461 -0.0989 12 6 3.5357 -5.8263 0.7581 13 7 4.6834 -5.4763 1.2966 14 14 3.1117 -7.6342 0.5556 15 1 2.9002 -7.9350 -0.8831 16 1 4.2264 -8.4655 1.0768 17 1 1.8711 -7.9396 1.3127 18 6 4.2677 -3.0919 -0.2776 19 6 4.6644 -1.6489 -0.0002 20 8 5.8136 -1.3172 0.2042 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5141 23 1 -0.3634 0.8901 0.5135 24 1 1.8793 2.1403 0.0010 25 1 4.4033 1.4197 0.0099 26 1 1.5643 -2.8547 -1.0191 27 1 0.9579 -2.6867 0.6465 28 1 5.3095 -6.1570 1.5890 29 1 4.0861 -3.2241 -1.3441 30 1 5.0656 -3.7606 0.0452 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674574.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:14 Heat of formation + Delta-G solvation = -19.809752 kcal Electronic energy + Delta-G solvation = -14625.147253 eV Core-core repulsion = 12191.964945 eV Total energy + Delta-G solvation = -2433.182308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.30573 -39.58360 -37.00655 -34.04452 -33.49926 -30.05726 -29.22176 -27.18662 -26.55208 -22.85208 -22.40998 -20.76209 -18.85888 -18.50589 -17.59886 -16.65400 -16.39789 -15.99663 -15.37718 -15.16517 -14.91064 -14.59771 -14.20106 -13.81018 -13.57524 -13.11867 -12.85395 -12.79629 -12.56716 -12.48113 -12.24923 -11.79581 -11.47070 -11.26058 -10.52672 -10.19456 -9.55347 -8.94540 -8.08814 -6.26829 0.52792 1.46583 1.48123 1.48759 1.56353 1.99963 2.38430 2.45868 3.18410 3.67425 3.84568 4.03303 4.19963 4.39528 4.45120 4.56253 4.59262 4.76818 4.82990 4.88222 4.94129 5.08037 5.17506 5.34160 5.58016 5.77803 5.84188 5.99406 6.15055 6.25449 6.43712 6.85646 6.92877 7.43910 8.95686 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037295 B = 0.009101 C = 0.007492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.594429 B = 3075.984381 C = 3736.203638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.427 5.427 3 C -0.015 4.015 4 C -0.171 4.171 5 C -0.318 4.318 6 C 0.097 3.903 7 C -0.035 4.035 8 C 0.064 3.936 9 H -0.007 1.007 10 C -0.530 4.530 11 H 0.075 0.925 12 C 0.008 3.992 13 N -0.922 5.922 14 Si 0.962 3.038 15 H -0.266 1.266 16 H -0.293 1.293 17 H -0.266 1.266 18 C -0.149 4.149 19 C 0.416 3.584 20 O -0.536 6.536 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.115 0.885 24 H 0.213 0.787 25 H 0.144 0.856 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.261 0.739 29 H 0.079 0.921 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.433 10.069 -3.755 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.100 5.100 3 C -0.141 4.141 4 C -0.193 4.193 5 C -0.326 4.326 6 C -0.024 4.024 7 C -0.073 4.073 8 C 0.044 3.956 9 H 0.011 0.989 10 C -0.568 4.568 11 H 0.093 0.907 12 C -0.191 4.191 13 N -0.561 5.561 14 Si 0.787 3.213 15 H -0.191 1.191 16 H -0.219 1.219 17 H -0.191 1.191 18 C -0.187 4.187 19 C 0.301 3.699 20 O -0.419 6.419 21 H 0.113 0.887 22 H 0.109 0.891 23 H 0.133 0.867 24 H 0.229 0.771 25 H 0.162 0.838 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.100 10.213 -3.572 16.232 hybrid contribution 0.641 -1.063 0.160 1.252 sum -11.458 9.150 -3.412 15.055 Atomic orbital electron populations 1.22527 0.74125 1.06412 1.05326 1.43641 1.08453 1.04511 1.53400 1.22390 0.89104 0.92149 1.10454 1.21870 0.97610 0.92255 1.07614 1.21402 0.93715 0.95180 1.22283 1.21416 0.89931 0.90842 1.00206 1.20324 0.99413 0.84746 1.02795 1.18489 0.89338 0.94304 0.93420 0.98906 1.21478 1.03831 0.90763 1.40708 0.90653 1.25894 0.94790 1.03809 0.94587 1.70052 1.09505 1.34821 1.41698 0.85545 0.77659 0.79209 0.78856 1.19117 1.21864 1.19057 1.22378 1.03287 0.92121 1.00936 1.22874 0.86492 0.91865 0.68637 1.90352 1.24676 1.84288 1.42568 0.88702 0.89057 0.86678 0.77071 0.83827 0.88967 0.89416 0.92968 0.90247 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 10.89 127.77 1.39 2.19 16 2 N -0.43 -11.14 3.07 -531.14 -1.63 -12.77 16 3 C -0.02 -0.39 11.34 83.14 0.94 0.55 16 4 C -0.17 -5.91 11.14 23.29 0.26 -5.65 16 5 C -0.32 -13.58 6.30 -19.11 -0.12 -13.70 16 6 C 0.10 3.48 6.78 42.46 0.29 3.77 16 7 C -0.04 -1.30 5.11 29.90 0.15 -1.15 16 8 C 0.06 3.15 2.01 -11.42 -0.02 3.12 16 9 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 10 C -0.53 -27.46 8.54 25.60 0.22 -27.24 16 11 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 12 C 0.01 0.44 5.29 84.65 0.45 0.88 16 13 N -0.92 -54.52 11.29 21.45 0.24 -54.27 16 14 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 16 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 18 C -0.15 -7.70 5.25 30.40 0.16 -7.54 16 19 C 0.42 21.27 7.09 28.37 0.20 21.47 16 20 O -0.54 -30.41 17.99 -3.23 -0.06 -30.47 16 21 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 22 H 0.09 1.29 7.44 -2.38 -0.02 1.28 16 23 H 0.11 0.96 8.13 -2.39 -0.02 0.94 16 24 H 0.21 3.09 8.06 -2.91 -0.02 3.06 16 25 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 26 H 0.09 3.14 8.13 -2.38 -0.02 3.12 16 27 H 0.09 2.85 7.60 -2.39 -0.02 2.83 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.08 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.08 4.79 5.96 -2.39 -0.01 4.77 16 Total: -1.00 -72.63 256.77 5.63 -67.00 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.13 Total: 9.50 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 3.92 Total: -23.29 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -1.39 Total: -67.04 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.06 Total: -30.47 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -72.63 5.63 -67.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674574.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.188 kcal (2) G-P(sol) polarization free energy of solvation -72.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds