Wall clock time and date at job start Mon Mar 30 2020 02:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36905 * 124.78033 * 2 1 4 4 C 1.34899 * 109.25309 * 179.91815 * 3 2 1 5 5 C 1.45198 * 105.91970 * 359.97438 * 4 3 2 6 6 C 1.33678 * 124.78337 * 180.02562 * 2 1 3 7 7 C 1.50718 * 129.57484 * 0.17563 * 6 2 1 8 8 C 1.53157 * 109.23747 * 159.50246 * 7 6 2 9 9 H 1.09008 * 109.18676 * 292.34678 * 8 7 6 10 10 C 1.50701 * 109.22104 * 172.97985 * 8 7 6 11 11 H 1.08002 * 119.99761 * 358.73802 * 10 8 7 12 12 C 1.37871 * 119.99694 * 179.02365 * 10 8 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 C 1.53191 * 110.74551 * 52.64990 * 8 7 6 19 19 C 1.46669 * 131.28262 * 180.16427 * 5 4 3 20 20 O 1.21350 * 122.46572 * 348.54145 * 19 5 4 21 21 H 1.09005 * 109.46746 * 269.99651 * 1 2 3 22 22 H 1.08987 * 109.47294 * 29.99683 * 1 2 3 23 23 H 1.08997 * 109.46951 * 150.00163 * 1 2 3 24 24 H 1.08000 * 125.36827 * 359.89746 * 3 2 1 25 25 H 1.07994 * 127.03536 * 180.02562 * 4 3 2 26 26 H 1.09005 * 109.50775 * 39.57690 * 7 6 2 27 27 H 1.08994 * 109.50956 * 279.43299 * 7 6 2 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 29 29 H 1.09006 * 109.68292 * 55.01581 * 18 8 7 30 30 H 1.09002 * 109.68150 * 175.57634 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2461 1.1245 0.0000 4 6 3.5458 0.7633 0.0018 5 6 3.5558 -0.6886 0.0036 6 6 2.2277 -1.0979 -0.0005 7 6 1.8213 -2.5493 -0.0047 8 6 2.9909 -3.3993 -0.5100 9 1 3.1617 -3.1829 -1.5646 10 6 2.6483 -4.8584 -0.3522 11 1 1.7034 -5.1471 0.0840 12 6 3.5436 -5.8245 -0.7594 13 7 4.6941 -5.4730 -1.2906 14 14 3.1222 -7.6331 -0.5567 15 1 1.7788 -7.7620 0.0627 16 1 3.1197 -8.2930 -1.8871 17 1 4.1334 -8.2822 0.3158 18 6 4.2664 -3.0922 0.2809 19 6 4.6645 -1.6487 0.0092 20 8 5.8146 -1.3168 -0.1901 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8899 -0.5137 23 1 -0.3633 -0.8900 -0.5138 24 1 1.8793 2.1403 -0.0016 25 1 4.4033 1.4198 0.0027 26 1 0.9622 -2.6848 -0.6618 27 1 1.5585 -2.8566 1.0074 28 1 5.3241 -6.1528 -1.5767 29 1 4.0789 -3.2262 1.3464 30 1 5.0662 -3.7603 -0.0386 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674575.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:16 Heat of formation + Delta-G solvation = -0.819176 kcal Electronic energy + Delta-G solvation = -14624.804563 eV Core-core repulsion = 12192.445749 eV Total energy + Delta-G solvation = -2432.358815 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.94574 -37.73567 -35.15092 -32.48795 -31.94078 -28.43057 -27.48474 -26.05754 -24.71793 -21.30469 -20.58031 -19.41624 -17.23198 -16.72775 -16.04261 -15.21048 -14.70201 -14.39105 -13.61511 -13.48380 -13.34524 -13.01671 -12.60784 -12.35959 -12.23692 -12.07809 -11.44378 -11.02503 -10.90859 -10.66683 -10.27588 -9.95025 -9.60029 -9.32883 -8.51237 -8.26622 -8.23584 -7.52873 -6.05792 -4.16203 2.19400 2.76737 3.14899 3.26887 3.35516 3.37621 4.07420 4.37053 4.85296 5.09974 5.17173 5.22096 5.31447 5.41443 5.63996 5.77619 6.00207 6.18597 6.36513 6.49788 6.59713 6.70101 6.85107 7.13039 7.28136 7.49979 7.58463 7.66324 7.80570 8.00113 8.27684 8.77077 8.87655 9.50109 10.99367 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037320 B = 0.009100 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.080999 B = 3076.111084 C = 3736.150570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.437 5.437 3 C -0.052 4.052 4 C -0.138 4.138 5 C -0.272 4.272 6 C 0.096 3.904 7 C -0.047 4.047 8 C 0.063 3.937 9 H 0.034 0.966 10 C -0.521 4.521 11 H 0.061 0.939 12 C 0.063 3.937 13 N -0.882 5.882 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.153 4.153 19 C 0.424 3.576 20 O -0.494 6.494 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.160 0.840 25 H 0.141 0.859 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.264 0.736 29 H 0.070 0.930 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 8.851 2.987 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.112 5.112 3 C -0.177 4.177 4 C -0.162 4.162 5 C -0.280 4.280 6 C -0.022 4.022 7 C -0.085 4.085 8 C 0.044 3.956 9 H 0.052 0.948 10 C -0.559 4.559 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.520 5.520 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.191 4.191 19 C 0.305 3.695 20 O -0.372 6.372 21 H 0.090 0.910 22 H 0.099 0.901 23 H 0.105 0.895 24 H 0.177 0.823 25 H 0.158 0.842 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.547 8.986 2.803 12.715 hybrid contribution -0.351 -0.765 0.074 0.845 sum -8.898 8.222 2.876 12.452 Atomic orbital electron populations 1.22059 0.77860 1.04357 1.03182 1.43310 1.06288 1.05764 1.55838 1.21691 0.90538 0.90419 1.15049 1.21654 0.95406 0.93788 1.05377 1.21501 0.93871 0.93794 1.18799 1.21715 0.90229 0.90122 1.00139 1.20573 1.01178 0.84976 1.01765 1.18595 0.87699 0.93667 0.95679 0.94814 1.21105 1.03209 0.89855 1.41690 0.92092 1.25007 0.94970 0.99235 0.94758 1.69873 1.08003 1.33497 1.40638 0.86496 0.78442 0.84990 0.77831 1.19753 1.20985 1.20906 1.22521 1.04064 0.91960 1.00528 1.22662 0.85999 0.91224 0.69596 1.90399 1.22968 1.83811 1.40043 0.90957 0.90093 0.89525 0.82310 0.84169 0.91610 0.90532 0.92610 0.91160 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 10.90 59.85 0.65 1.33 16 2 N -0.44 -6.64 3.07 -119.23 -0.37 -7.01 16 3 C -0.05 -0.77 11.34 -16.47 -0.19 -0.96 16 4 C -0.14 -2.50 11.14 -38.01 -0.42 -2.92 16 5 C -0.27 -5.78 6.30 -103.46 -0.65 -6.43 16 6 C 0.10 1.81 6.78 -81.51 -0.55 1.26 16 7 C -0.05 -0.91 5.11 -27.79 -0.14 -1.05 16 8 C 0.06 1.51 2.01 -91.59 -0.18 1.33 16 9 H 0.03 0.91 8.14 -51.92 -0.42 0.48 16 10 C -0.52 -13.44 8.54 -34.44 -0.29 -13.73 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.68 5.28 -17.82 -0.09 1.58 16 13 N -0.88 -24.94 11.28 55.43 0.63 -24.31 16 14 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.15 -3.75 5.25 -27.05 -0.14 -3.89 16 19 C 0.42 10.26 7.09 -30.17 -0.21 10.05 16 20 O -0.49 -13.09 17.99 5.50 0.10 -12.99 16 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 0.62 8.13 -51.94 -0.42 0.19 16 23 H 0.09 0.84 7.44 -51.93 -0.39 0.45 16 24 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 25 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 26 H 0.07 1.16 7.61 -51.93 -0.39 0.76 16 27 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.12 3.31 5.94 -51.93 -0.31 3.01 16 LS Contribution 256.76 15.07 3.87 3.87 Total: -1.00 -31.34 256.76 -6.62 -37.96 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -3.59 Total: 0.45 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.23 Total: -13.43 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.26 Total: -31.32 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.10 Total: -12.99 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.34 -6.62 -37.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674575.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.139 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds