Wall clock time and date at job start Mon Mar 30 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.32319 * 120.46259 * 2 1 4 4 C 1.31791 * 120.70151 * 179.97438 * 3 2 1 5 5 N 1.31714 * 121.77492 * 359.91744 * 4 3 2 6 6 C 1.32670 * 120.88394 * 0.07516 * 5 4 3 7 7 C 1.37989 * 118.93023 * 0.03910 * 6 5 4 8 8 C 1.50431 * 121.88980 * 179.74259 * 7 6 5 9 9 C 1.52996 * 109.82517 * 16.71161 * 8 7 6 10 10 N 1.47148 * 108.60355 * 309.88076 * 9 8 7 11 11 C 1.46705 * 110.39124 * 71.17972 * 10 9 8 12 12 H 1.08999 * 109.32691 * 67.78172 * 11 10 9 13 13 C 1.50698 * 109.17525 * 187.33219 * 11 10 9 14 14 H 1.08006 * 120.00551 * 120.81226 * 13 11 10 15 15 C 1.37885 * 120.00032 * 300.81466 * 13 11 10 16 16 N 1.31517 * 119.99871 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00041 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47246 * 89.99500 * 17 15 13 19 19 H 1.48499 * 109.46866 * 209.99427 * 17 15 13 20 20 H 1.48498 * 109.46843 * 329.99709 * 17 15 13 21 21 H 1.08998 * 109.46963 * 270.01991 * 1 2 3 22 22 H 1.09001 * 109.47213 * 30.01585 * 1 2 3 23 23 H 1.09004 * 109.47422 * 150.02409 * 1 2 3 24 24 H 1.08002 * 119.10932 * 180.20153 * 4 3 2 25 25 H 1.09000 * 109.41504 * 256.60203 * 8 7 6 26 26 H 1.09007 * 109.40759 * 136.81778 * 8 7 6 27 27 H 1.08997 * 109.61161 * 190.14420 * 9 8 7 28 28 H 1.09001 * 109.75845 * 69.70206 * 9 8 7 29 29 H 1.00900 * 110.99590 * 307.66055 * 10 9 8 30 30 H 0.96997 * 119.99938 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1777 1.1405 0.0000 4 6 3.4956 1.1460 0.0005 5 7 4.1939 0.0292 0.0026 6 6 3.5895 -1.1518 0.0029 7 6 2.2103 -1.1958 0.0000 8 6 1.4567 -2.4978 -0.0056 9 6 2.3891 -3.6387 0.4064 10 7 3.6161 -3.5574 -0.4017 11 6 4.4236 -2.4038 0.0098 12 1 4.8102 -2.5741 1.0146 13 6 5.5764 -2.2401 -0.9469 14 1 5.6909 -1.3209 -1.5025 15 6 6.4852 -3.2637 -1.1131 16 7 6.3461 -4.3827 -0.4362 17 14 7.9146 -3.0605 -2.2984 18 1 9.0761 -2.4795 -1.5783 19 1 8.2891 -4.3857 -2.8540 20 1 7.5148 -2.1546 -3.4051 21 1 -0.3633 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 4.0171 2.0918 0.0038 25 1 1.0710 -2.6888 -1.0070 26 1 0.6251 -2.4380 0.6965 27 1 1.8971 -4.5952 0.2296 28 1 2.6400 -3.5462 1.4631 29 1 3.3985 -3.5139 -1.3860 30 1 6.9852 -5.1030 -0.5534 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259683927.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:03 Heat of formation + Delta-G solvation = 24.607841 kcal Electronic energy + Delta-G solvation = -14814.801048 eV Core-core repulsion = 12415.837583 eV Total energy + Delta-G solvation = -2398.963465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.22264 -38.38558 -35.91833 -34.47848 -32.87065 -31.24763 -29.32765 -27.46279 -25.14132 -24.83985 -22.42657 -21.50866 -18.96025 -18.24713 -17.38220 -16.56935 -16.18723 -16.01366 -15.35474 -14.82711 -14.57820 -14.16508 -13.93342 -13.59841 -13.50423 -13.45941 -13.03898 -12.77336 -12.57736 -12.19607 -11.94903 -11.65481 -11.24938 -10.94914 -10.56976 -10.12818 -9.96102 -8.79820 -8.01415 -6.19788 0.04384 0.21169 1.43058 1.44456 1.53994 2.45931 2.87041 3.17103 3.22017 3.38671 3.61356 3.77527 4.00095 4.05776 4.33894 4.41730 4.53614 4.68656 4.74197 4.91030 4.97685 5.03604 5.09801 5.14840 5.30896 5.64473 5.77479 5.99447 6.23652 6.54415 6.96862 6.99044 7.31501 7.50263 9.02610 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.036688 B = 0.010084 C = 0.008332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.007463 B = 2776.134501 C = 3359.825389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.160 3.840 3 N -0.544 5.544 4 C 0.268 3.732 5 N -0.537 5.537 6 C 0.150 3.850 7 C -0.206 4.206 8 C -0.094 4.094 9 C 0.047 3.953 10 N -0.654 5.654 11 C 0.266 3.734 12 H 0.020 0.980 13 C -0.533 4.533 14 H 0.046 0.954 15 C 0.036 3.964 16 N -0.877 5.877 17 Si 0.951 3.049 18 H -0.280 1.280 19 H -0.279 1.279 20 H -0.276 1.276 21 H 0.100 0.900 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.214 0.786 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.328 0.672 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.287 4.479 0.411 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.013 3.987 3 N -0.259 5.259 4 C -0.020 4.020 5 N -0.252 5.252 6 C 0.005 3.995 7 C -0.210 4.210 8 C -0.134 4.134 9 C -0.082 4.082 10 N -0.281 5.281 11 C 0.156 3.844 12 H 0.037 0.963 13 C -0.572 4.572 14 H 0.064 0.936 15 C -0.168 4.168 16 N -0.513 5.513 17 Si 0.777 3.223 18 H -0.206 1.206 19 H -0.204 1.204 20 H -0.201 1.201 21 H 0.118 0.882 22 H 0.104 0.896 23 H 0.118 0.882 24 H 0.230 0.770 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.362 4.661 0.850 12.310 hybrid contribution 0.458 0.202 -0.781 0.928 sum -10.904 4.863 0.068 11.940 Atomic orbital electron populations 1.20861 0.84721 1.05019 1.04765 1.22329 0.99323 0.87153 0.89893 1.68292 1.10285 1.30733 1.16617 1.25423 0.87360 0.97504 0.91689 1.68447 1.42808 0.99322 1.14590 1.23138 0.92647 0.95881 0.87860 1.21397 0.94698 0.99336 1.05558 1.21121 0.98468 0.89993 1.03798 1.22230 0.90194 0.98036 0.97789 1.61132 1.17208 1.42608 1.07144 1.17767 0.89945 0.80495 0.96189 0.96253 1.20979 1.09666 1.00615 1.25979 0.93563 1.25627 0.99290 0.94842 0.96996 1.70212 1.35684 1.04800 1.40560 0.85696 0.79937 0.77275 0.79367 1.20551 1.20421 1.20098 0.88154 0.89559 0.88211 0.77006 0.88994 0.87337 0.88767 0.93029 0.85505 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 9.50 71.23 0.68 -1.25 16 2 C 0.16 5.07 6.83 42.60 0.29 5.37 16 3 N -0.54 -18.92 10.38 -188.05 -1.95 -20.87 16 4 C 0.27 10.05 12.28 180.91 2.22 12.27 16 5 N -0.54 -24.52 9.49 -188.63 -1.79 -26.31 16 6 C 0.15 6.84 6.22 42.29 0.26 7.10 16 7 C -0.21 -7.42 5.77 -19.89 -0.11 -7.53 16 8 C -0.09 -2.63 4.69 29.76 0.14 -2.49 16 9 C 0.05 1.63 6.62 86.25 0.57 2.20 16 10 N -0.65 -29.86 5.88 -499.65 -2.94 -32.80 16 11 C 0.27 13.72 2.52 43.38 0.11 13.83 16 12 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 13 C -0.53 -30.24 8.31 25.60 0.21 -30.03 16 14 H 0.05 2.72 7.33 -2.91 -0.02 2.70 16 15 C 0.04 2.04 5.38 84.66 0.46 2.49 16 16 N -0.88 -50.76 12.72 21.45 0.27 -50.49 16 17 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.10 1.57 6.95 -2.38 -0.02 1.55 16 24 H 0.21 6.29 8.06 -2.91 -0.02 6.27 16 25 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.11 2.26 7.45 -2.38 -0.02 2.24 16 27 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 28 H 0.05 1.89 8.05 -2.39 -0.02 1.87 16 29 H 0.33 14.84 8.55 -89.69 -0.77 14.07 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -67.50 252.84 0.83 -66.66 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.39 Total: 15.19 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 4.83 Total: 1.95 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -6.40 Total: -130.47 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.50 0.83 -66.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683927.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.273 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds