Wall clock time and date at job start Mon Mar 30 2020 03:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34136 * 125.82044 * 2 1 4 4 C 1.31709 * 109.28512 * 179.97438 * 3 2 1 5 5 N 1.37609 * 144.39167 * 180.02562 * 4 3 2 6 6 H 0.97001 * 126.12650 * 359.96910 * 5 4 3 7 7 C 1.38317 * 107.73937 * 180.23923 * 5 4 3 8 8 C 1.32886 * 108.40477 * 359.54041 * 7 5 4 9 9 C 1.50692 * 125.74865 * 180.14491 * 8 7 5 10 10 C 1.50703 * 109.47364 * 85.38081 * 9 8 7 11 11 H 1.07999 * 119.99601 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99910 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00650 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00056 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46823 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47233 * 120.00073 * 14 12 10 17 17 H 1.48497 * 109.47334 * 240.00442 * 14 12 10 18 18 N 1.36126 * 108.27001 * 0.02562 * 4 3 2 19 19 C 1.34659 * 125.81574 * 179.97438 * 2 1 3 20 20 C 1.50693 * 126.51865 * 359.97299 * 19 2 1 21 21 H 1.08999 * 109.47095 * 90.01984 * 1 2 3 22 22 H 1.09001 * 109.47089 * 210.02260 * 1 2 3 23 23 H 1.09001 * 109.46623 * 330.01693 * 1 2 3 24 24 H 1.08001 * 125.79949 * 179.71454 * 7 5 4 25 25 H 1.09000 * 109.47260 * 205.38604 * 9 8 7 26 26 H 1.09001 * 109.47197 * 325.38252 * 9 8 7 27 27 H 0.96993 * 120.00663 * 179.97438 * 13 12 10 28 28 H 1.08993 * 109.47409 * 90.02748 * 20 19 2 29 29 H 1.09009 * 109.47218 * 210.02725 * 20 19 2 30 30 H 1.09000 * 109.46837 * 330.01991 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2921 1.0876 0.0000 4 6 3.5547 0.7128 0.0006 5 7 4.8553 1.1625 0.0013 6 1 5.1397 2.0898 0.0011 7 6 5.6841 0.0551 -0.0040 8 6 4.9260 -1.0363 0.0023 9 6 5.4283 -2.4571 0.0027 10 6 5.7110 -2.8896 1.4184 11 1 5.5433 -2.2042 2.2360 12 6 6.1828 -4.1605 1.6697 13 7 6.3866 -4.9953 0.6741 14 14 6.5339 -4.6964 3.4244 15 1 6.2251 -3.5802 4.3540 16 1 5.6885 -5.8696 3.7622 17 1 7.9666 -5.0655 3.5520 18 7 3.5959 -0.6478 0.0003 19 6 2.2951 -1.0920 0.0005 20 6 1.8378 -2.5278 0.0017 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3632 0.8902 0.5136 24 1 6.7639 0.0742 -0.0092 25 1 4.6718 -3.1100 -0.4325 26 1 6.3437 -2.5190 -0.5858 27 1 6.7188 -5.8892 0.8509 28 1 1.7276 -2.8749 -1.0256 29 1 2.5755 -3.1437 0.5162 30 1 0.8795 -2.6035 0.5157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259729227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:58 Heat of formation + Delta-G solvation = 98.616986 kcal Electronic energy + Delta-G solvation = -14531.941607 eV Core-core repulsion = 12136.187418 eV Total energy + Delta-G solvation = -2395.754188 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.67695 -37.93710 -33.88485 -32.54549 -31.46520 -30.23582 -28.29436 -26.23266 -24.69897 -23.16547 -20.89826 -20.25370 -18.55629 -16.54200 -16.29593 -15.58964 -15.52976 -14.62574 -14.00197 -13.21640 -12.88093 -12.56446 -12.46003 -12.43027 -12.27082 -12.03916 -11.66155 -11.23513 -11.06321 -10.87920 -10.70102 -10.33267 -9.97144 -9.39674 -9.31847 -8.55590 -7.59896 -6.83457 -6.15144 -4.21514 2.33799 2.93822 3.18919 3.22476 3.31191 3.36893 3.59473 3.62703 4.35285 5.02408 5.18454 5.31861 5.67178 5.72549 5.82214 5.91117 5.96355 6.03410 6.17729 6.25462 6.45710 6.57660 6.61995 7.17049 7.25514 7.31507 7.42533 7.78197 7.81668 8.05526 8.16182 8.68716 8.82636 9.43647 10.92834 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.008814 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.339336 B = 3175.896920 C = 3607.668692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.034 3.966 3 N -0.525 5.525 4 C 0.379 3.621 5 N -0.596 5.596 6 H 0.429 0.571 7 C 0.002 3.998 8 C 0.050 3.950 9 C 0.082 3.918 10 C -0.516 4.516 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.393 5.393 19 C -0.046 4.046 20 C -0.070 4.070 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.192 0.808 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 7.121 -1.790 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 N -0.256 5.256 4 C 0.030 3.970 5 N -0.218 5.218 6 H 0.268 0.732 7 C -0.120 4.120 8 C -0.055 4.055 9 C 0.044 3.956 10 C -0.555 4.555 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.071 5.071 19 C -0.159 4.159 20 C -0.128 4.128 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.209 0.791 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.127 7.587 -1.829 9.337 hybrid contribution 0.874 -0.673 0.978 1.475 sum -4.252 6.913 -0.851 8.161 Atomic orbital electron populations 1.19959 0.87570 1.02251 1.01771 1.20243 0.95640 0.86805 1.06837 1.70106 0.94824 1.29487 1.31178 1.20441 0.88249 0.81123 1.07235 1.40893 1.00091 1.08833 1.71980 0.73200 1.21596 0.96762 0.82319 1.11287 1.21204 0.78303 0.99486 1.06507 1.17922 0.96704 0.82556 0.98412 1.21070 1.44360 0.98361 0.91669 0.92431 1.24977 0.95274 0.96405 0.97384 1.69947 1.45313 1.06878 1.30860 0.86465 0.78010 0.78691 0.84498 1.19699 1.20835 1.20785 1.43587 1.05345 1.08476 1.49715 1.20283 0.79900 0.97342 1.18392 1.20119 1.01316 0.89495 1.01885 0.91703 0.91319 0.91536 0.79097 0.94874 0.93691 0.92684 0.92048 0.90463 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.21 36.01 0.37 -0.44 16 2 C 0.03 0.65 7.08 -82.85 -0.59 0.06 16 3 N -0.52 -10.86 11.30 -10.21 -0.12 -10.97 16 4 C 0.38 7.81 9.64 -320.11 -3.08 4.72 16 5 N -0.60 -9.98 6.27 -13.41 -0.08 -10.07 16 6 H 0.43 5.39 8.96 -40.82 -0.37 5.02 16 7 C 0.00 0.04 11.79 -16.47 -0.19 -0.15 16 8 C 0.05 1.10 6.34 -81.40 -0.52 0.58 16 9 C 0.08 2.02 5.50 -29.04 -0.16 1.86 16 10 C -0.52 -13.90 9.09 -34.44 -0.31 -14.21 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 14 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.39 -8.61 3.53 -55.61 -0.20 -8.80 16 19 C -0.05 -0.94 7.25 -81.34 -0.59 -1.53 16 20 C -0.07 -1.25 10.22 36.00 0.37 -0.88 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.07 0.83 7.14 -51.93 -0.37 0.46 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.19 2.74 8.06 -52.49 -0.42 2.32 16 25 H 0.03 0.88 7.77 -51.93 -0.40 0.47 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.57 7.77 -51.92 -0.40 1.17 16 30 H 0.07 1.04 7.15 -51.93 -0.37 0.67 16 LS Contribution 263.28 15.07 3.97 3.97 Total: -1.00 -31.83 263.28 -9.09 -40.91 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -3.57 Total: 1.88 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -4.81 Total: -8.40 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.34 Total: -54.29 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.83 -9.09 -40.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.531 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds