Wall clock time and date at job start Mon Mar 30 2020 03:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34136 * 125.82044 * 2 1 4 4 C 1.31709 * 109.28512 * 179.97438 * 3 2 1 5 5 N 1.37609 * 144.39167 * 180.02562 * 4 3 2 6 6 H 0.97001 * 126.12650 * 359.96910 * 5 4 3 7 7 C 1.38317 * 107.73937 * 180.23923 * 5 4 3 8 8 C 1.32886 * 108.40477 * 359.54041 * 7 5 4 9 9 C 1.50692 * 125.74865 * 180.14491 * 8 7 5 10 10 C 1.50703 * 109.47364 * 85.38081 * 9 8 7 11 11 H 1.07999 * 119.99601 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99910 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00650 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00056 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46823 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47233 * 120.00073 * 14 12 10 17 17 H 1.48497 * 109.47334 * 240.00442 * 14 12 10 18 18 N 1.36126 * 108.27001 * 0.02562 * 4 3 2 19 19 C 1.34659 * 125.81574 * 179.97438 * 2 1 3 20 20 C 1.50693 * 126.51865 * 359.97299 * 19 2 1 21 21 H 1.08999 * 109.47095 * 90.01984 * 1 2 3 22 22 H 1.09001 * 109.47089 * 210.02260 * 1 2 3 23 23 H 1.09001 * 109.46623 * 330.01693 * 1 2 3 24 24 H 1.08001 * 125.79949 * 179.71454 * 7 5 4 25 25 H 1.09000 * 109.47260 * 205.38604 * 9 8 7 26 26 H 1.09001 * 109.47197 * 325.38252 * 9 8 7 27 27 H 0.96993 * 120.00663 * 179.97438 * 13 12 10 28 28 H 1.08993 * 109.47409 * 90.02748 * 20 19 2 29 29 H 1.09009 * 109.47218 * 210.02725 * 20 19 2 30 30 H 1.09000 * 109.46837 * 330.01991 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2921 1.0876 0.0000 4 6 3.5547 0.7128 0.0006 5 7 4.8553 1.1625 0.0013 6 1 5.1397 2.0898 0.0011 7 6 5.6841 0.0551 -0.0040 8 6 4.9260 -1.0363 0.0023 9 6 5.4283 -2.4571 0.0027 10 6 5.7110 -2.8896 1.4184 11 1 5.5433 -2.2042 2.2360 12 6 6.1828 -4.1605 1.6697 13 7 6.3866 -4.9953 0.6741 14 14 6.5339 -4.6964 3.4244 15 1 6.2251 -3.5802 4.3540 16 1 5.6885 -5.8696 3.7622 17 1 7.9666 -5.0655 3.5520 18 7 3.5959 -0.6478 0.0003 19 6 2.2951 -1.0920 0.0005 20 6 1.8378 -2.5278 0.0017 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3632 0.8902 0.5136 24 1 6.7639 0.0742 -0.0092 25 1 4.6718 -3.1100 -0.4325 26 1 6.3437 -2.5190 -0.5858 27 1 6.7188 -5.8892 0.8509 28 1 1.7276 -2.8749 -1.0256 29 1 2.5755 -3.1437 0.5162 30 1 0.8795 -2.6035 0.5157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259729227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:58 Heat of formation + Delta-G solvation = 81.430205 kcal Electronic energy + Delta-G solvation = -14532.686881 eV Core-core repulsion = 12136.187418 eV Total energy + Delta-G solvation = -2396.499463 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.18726 -39.41825 -35.73147 -34.28030 -32.84962 -31.92633 -29.80575 -27.88126 -26.16172 -25.07116 -22.44403 -21.68323 -20.16293 -18.58670 -17.76039 -17.17645 -17.05372 -16.52373 -15.43349 -14.61962 -14.53297 -14.25894 -13.88769 -13.86679 -13.80533 -13.68130 -13.01158 -12.83644 -12.71184 -12.54234 -12.44759 -12.00662 -11.91368 -11.30165 -10.87986 -10.63908 -9.10248 -8.43469 -8.14781 -6.36047 0.85119 1.37859 1.39616 1.50453 1.51872 1.62320 2.11044 2.14330 2.39806 3.08714 3.63181 3.89036 4.28303 4.32953 4.35983 4.61189 4.71057 4.75379 4.94459 4.97640 5.04153 5.10496 5.20775 5.27407 5.43720 5.68836 5.74056 5.90416 6.09823 6.42725 6.56398 6.73487 7.19342 7.33102 8.85734 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.008814 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.339336 B = 3175.896920 C = 3607.668692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.035 3.965 3 N -0.541 5.541 4 C 0.358 3.642 5 N -0.573 5.573 6 H 0.450 0.550 7 C 0.046 3.954 8 C -0.007 4.007 9 C 0.098 3.902 10 C -0.527 4.527 11 H 0.048 0.952 12 C 0.015 3.985 13 N -0.923 5.923 14 Si 0.960 3.040 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.271 1.271 18 N -0.406 5.406 19 C -0.084 4.084 20 C -0.061 4.061 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.231 0.769 25 H 0.001 0.999 26 H 0.035 0.965 27 H 0.267 0.733 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 8.183 -1.103 9.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 N -0.273 5.273 4 C 0.008 3.992 5 N -0.197 5.197 6 H 0.293 0.707 7 C -0.078 4.078 8 C -0.112 4.112 9 C 0.060 3.940 10 C -0.565 4.565 11 H 0.066 0.934 12 C -0.185 4.185 13 N -0.563 5.563 14 Si 0.785 3.215 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.197 1.197 18 N -0.085 5.085 19 C -0.196 4.196 20 C -0.118 4.118 21 H 0.101 0.899 22 H 0.107 0.893 23 H 0.093 0.907 24 H 0.247 0.753 25 H 0.020 0.980 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.323 8.690 -1.146 10.255 hybrid contribution 0.924 -0.937 0.722 1.501 sum -4.399 7.753 -0.424 8.924 Atomic orbital electron populations 1.20137 0.84131 1.03690 1.03373 1.21050 0.97690 0.85820 1.04907 1.70135 0.95079 1.30189 1.31848 1.20922 0.89351 0.81025 1.07911 1.40948 0.98679 1.09763 1.70284 0.70669 1.22140 0.98004 0.81386 1.06295 1.20931 0.79320 0.99137 1.11850 1.17506 0.95257 0.84305 0.96889 1.21287 1.44193 0.98523 0.92514 0.93416 1.25761 0.95030 0.96425 1.01241 1.70045 1.46077 1.07297 1.32860 0.85475 0.78235 0.78106 0.79700 1.19578 1.20511 1.19670 1.43782 1.05668 1.09157 1.49897 1.20884 0.80007 0.98746 1.20012 1.20091 1.01616 0.87804 1.02321 0.89898 0.89287 0.90662 0.75270 0.98040 0.94694 0.92395 0.91255 0.94156 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.42 10.21 71.24 0.73 -0.69 16 2 C 0.03 1.29 7.08 41.39 0.29 1.58 16 3 N -0.54 -21.78 11.30 -186.23 -2.10 -23.88 16 4 C 0.36 14.36 9.64 260.54 2.51 16.87 16 5 N -0.57 -17.99 6.27 -196.33 -1.23 -19.22 16 6 H 0.45 9.98 8.96 -92.71 -0.83 9.15 16 7 C 0.05 1.55 11.79 82.49 0.97 2.52 16 8 C -0.01 -0.31 6.34 40.32 0.26 -0.06 16 9 C 0.10 5.02 5.50 29.10 0.16 5.18 16 10 C -0.53 -28.87 9.09 25.60 0.23 -28.64 16 11 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 12 C 0.01 0.80 5.46 84.65 0.46 1.26 16 13 N -0.92 -52.98 13.29 21.45 0.28 -52.70 16 14 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 N -0.41 -17.87 3.53 -329.85 -1.16 -19.04 16 19 C -0.08 -3.44 7.25 40.85 0.30 -3.14 16 20 C -0.06 -2.17 10.22 71.23 0.73 -1.44 16 21 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.09 1.89 7.14 -2.39 -0.02 1.87 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.23 5.81 8.06 -2.91 -0.02 5.78 16 25 H 0.00 0.07 7.77 -2.39 -0.02 0.05 16 26 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.04 1.71 7.77 -2.38 -0.02 1.69 16 30 H 0.10 2.91 7.15 -2.39 -0.02 2.89 16 Total: -1.00 -69.66 263.28 4.77 -64.89 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.32 Total: 11.47 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 6.64 Total: -6.56 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.22 Total: -114.84 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.66 4.77 -64.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.318 kcal (2) G-P(sol) polarization free energy of solvation -69.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds