Wall clock time and date at job start Mon Mar 30 2020 03:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34651 * 126.51677 * 2 1 4 4 N 1.34141 * 108.36080 * 180.02562 * 3 2 1 5 5 C 1.31704 * 109.28185 * 359.97438 * 4 3 2 6 6 N 1.37611 * 144.38675 * 180.41811 * 5 4 3 7 7 C 1.46496 * 126.13474 * 359.81495 * 6 5 4 8 8 C 1.38321 * 107.73715 * 179.97438 * 6 5 4 9 9 C 1.50697 * 125.79451 * 179.87165 * 8 6 5 10 10 C 1.50700 * 109.47266 * 264.71379 * 9 8 6 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47163 * 59.99902 * 14 12 10 16 16 H 1.48495 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99897 * 14 12 10 18 18 C 1.32880 * 108.40390 * 359.60902 * 8 6 5 19 19 N 1.36121 * 108.27349 * 359.97438 * 5 4 3 20 20 H 1.09004 * 109.46770 * 270.02458 * 1 2 3 21 21 H 1.09003 * 109.46703 * 30.01995 * 1 2 3 22 22 H 1.08999 * 109.46893 * 150.02251 * 1 2 3 23 23 H 1.08005 * 125.82546 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.47511 * 270.18020 * 7 6 5 25 25 H 1.09010 * 109.46984 * 30.17959 * 7 6 5 26 26 H 1.09002 * 109.47250 * 150.17458 * 7 6 5 27 27 H 1.09004 * 109.47205 * 144.71472 * 9 8 6 28 28 H 1.08997 * 109.47395 * 24.71965 * 9 8 6 29 29 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 30 30 H 1.08006 * 125.74346 * 180.28109 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3083 1.0822 0.0000 4 7 3.5829 0.6642 -0.0006 5 6 3.6088 -0.6526 -0.0004 6 7 4.4319 -1.7554 0.0052 7 6 5.8968 -1.7399 0.0114 8 6 3.6283 -2.8811 0.0004 9 6 4.1110 -4.3087 0.0012 10 6 4.1544 -4.8251 -1.4139 11 1 3.8621 -4.1835 -2.2321 12 6 4.5673 -6.1167 -1.6642 13 7 4.9284 -6.8961 -0.6683 14 14 4.6218 -6.7565 -3.4183 15 1 5.5505 -5.9210 -4.2213 16 1 5.0974 -8.1632 -3.4175 17 1 3.2615 -6.6936 -4.0107 18 6 2.3583 -2.4900 0.0007 19 7 2.3249 -1.1047 0.0009 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.9807 2.1113 0.0004 24 1 6.2645 -1.7349 -1.0147 25 1 6.2486 -0.8467 0.5278 26 1 6.2674 -2.6266 0.5258 27 1 3.4299 -4.9222 0.5910 28 1 5.1096 -4.3544 0.4355 29 1 5.2185 -7.8048 -0.8444 30 1 1.4973 -3.1420 0.0018 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259736480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:11 Heat of formation + Delta-G solvation = 109.434393 kcal Electronic energy + Delta-G solvation = -14400.647212 eV Core-core repulsion = 12005.362102 eV Total energy + Delta-G solvation = -2395.285110 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.69673 -38.13193 -33.51461 -33.37855 -31.33404 -30.36635 -27.42538 -26.16942 -25.09073 -23.45996 -20.41856 -19.78259 -19.64060 -16.64719 -15.79838 -15.76646 -15.39682 -14.79821 -13.89263 -13.74060 -13.49034 -12.63717 -12.61513 -12.55544 -12.31610 -12.18548 -11.81032 -11.48760 -11.06687 -10.82474 -10.73326 -10.19587 -10.02131 -9.57871 -9.45603 -8.62065 -7.64637 -6.91931 -6.23954 -4.30094 2.37557 2.73622 3.07037 3.22115 3.26946 3.30920 3.55114 3.63974 4.29933 4.88985 5.10300 5.14084 5.44096 5.50710 5.56619 5.70551 5.76839 5.90804 5.95205 6.00391 6.27416 6.34812 6.53223 6.97754 7.03542 7.19303 7.41217 7.69484 7.70884 7.98510 8.05519 8.61147 8.73496 9.35672 10.85091 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.039314 B = 0.007596 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.044188 B = 3685.129119 C = 3981.626167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.078 4.078 3 C 0.018 3.982 4 N -0.525 5.525 5 C 0.378 3.622 6 N -0.480 5.480 7 C 0.104 3.896 8 C 0.141 3.859 9 C 0.080 3.920 10 C -0.522 4.522 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.891 5.891 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.091 4.091 19 N -0.393 5.393 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.172 0.828 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.266 0.734 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 8.503 1.837 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.191 4.191 3 C -0.133 4.133 4 N -0.254 5.254 5 C 0.030 3.970 6 N -0.178 5.178 7 C -0.037 4.037 8 C 0.034 3.966 9 C 0.042 3.958 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.212 4.212 19 N -0.070 5.070 20 H 0.079 0.921 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.189 0.811 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.064 8.748 1.888 9.460 hybrid contribution -0.634 -0.953 -1.006 1.524 sum -3.698 7.795 0.882 8.673 Atomic orbital electron populations 1.19981 0.87781 1.02441 1.01656 1.20423 0.93687 0.84074 1.20961 1.21851 0.87040 0.97753 1.06618 1.70201 1.22159 1.02699 1.30360 1.20472 0.80568 0.88384 1.07609 1.43470 1.06068 1.01067 1.67212 1.21765 0.74990 1.03717 1.03228 1.21629 0.87232 0.90819 0.96948 1.18073 0.97794 0.81003 0.98937 1.20932 1.45998 0.97744 0.91342 0.92255 1.24967 0.94725 0.96584 0.97601 1.69923 1.43739 1.08087 1.31107 0.86521 0.78727 0.77863 0.84198 1.20090 1.21035 1.20003 1.21080 0.98272 0.79847 1.22045 1.43466 1.08212 1.05808 1.49557 0.92061 0.90729 0.92332 0.81067 0.91327 0.90527 0.89131 0.92989 0.94323 0.92413 0.80703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.44 36.01 0.38 -0.40 16 2 C -0.08 -1.36 7.25 -81.34 -0.59 -1.95 16 3 C 0.02 0.31 11.77 -17.81 -0.21 0.10 16 4 N -0.52 -10.77 11.30 -14.00 -0.16 -10.93 16 5 C 0.38 8.02 9.18 -320.12 -2.94 5.08 16 6 N -0.48 -9.80 3.25 -120.62 -0.39 -10.19 16 7 C 0.10 1.73 11.00 59.84 0.66 2.38 16 8 C 0.14 3.01 6.08 -81.51 -0.50 2.52 16 9 C 0.08 1.87 5.26 -29.04 -0.15 1.72 16 10 C -0.52 -13.59 9.09 -34.44 -0.31 -13.90 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -24.42 13.29 55.43 0.74 -23.69 16 14 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 18 C -0.09 -1.85 11.79 -16.35 -0.19 -2.04 16 19 N -0.39 -7.99 3.53 -59.77 -0.21 -8.20 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.17 2.28 8.06 -52.48 -0.42 1.86 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 26 H 0.09 1.42 7.04 -51.93 -0.37 1.05 16 27 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.04 0.92 7.01 -51.93 -0.36 0.56 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.18 3.18 8.06 -52.48 -0.42 2.76 16 LS Contribution 264.60 15.07 3.99 3.99 Total: -1.00 -30.28 264.60 -8.66 -38.94 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.65 Total: -0.50 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.95 Total: -4.90 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.02 Total: -53.00 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.28 -8.66 -38.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.374 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds