Wall clock time and date at job start Mon Mar 30 2020 03:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34651 * 126.51677 * 2 1 4 4 N 1.34141 * 108.36080 * 180.02562 * 3 2 1 5 5 C 1.31704 * 109.28185 * 359.97438 * 4 3 2 6 6 N 1.37611 * 144.38675 * 180.41811 * 5 4 3 7 7 C 1.46496 * 126.13474 * 359.81495 * 6 5 4 8 8 C 1.38321 * 107.73715 * 179.97438 * 6 5 4 9 9 C 1.50697 * 125.79451 * 179.87165 * 8 6 5 10 10 C 1.50700 * 109.47266 * 264.71379 * 9 8 6 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47163 * 59.99902 * 14 12 10 16 16 H 1.48495 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99897 * 14 12 10 18 18 C 1.32880 * 108.40390 * 359.60902 * 8 6 5 19 19 N 1.36121 * 108.27349 * 359.97438 * 5 4 3 20 20 H 1.09004 * 109.46770 * 270.02458 * 1 2 3 21 21 H 1.09003 * 109.46703 * 30.01995 * 1 2 3 22 22 H 1.08999 * 109.46893 * 150.02251 * 1 2 3 23 23 H 1.08005 * 125.82546 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.47511 * 270.18020 * 7 6 5 25 25 H 1.09010 * 109.46984 * 30.17959 * 7 6 5 26 26 H 1.09002 * 109.47250 * 150.17458 * 7 6 5 27 27 H 1.09004 * 109.47205 * 144.71472 * 9 8 6 28 28 H 1.08997 * 109.47395 * 24.71965 * 9 8 6 29 29 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 30 30 H 1.08006 * 125.74346 * 180.28109 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3083 1.0822 0.0000 4 7 3.5829 0.6642 -0.0006 5 6 3.6088 -0.6526 -0.0004 6 7 4.4319 -1.7554 0.0052 7 6 5.8968 -1.7399 0.0114 8 6 3.6283 -2.8811 0.0004 9 6 4.1110 -4.3087 0.0012 10 6 4.1544 -4.8251 -1.4139 11 1 3.8621 -4.1835 -2.2321 12 6 4.5673 -6.1167 -1.6642 13 7 4.9284 -6.8961 -0.6683 14 14 4.6218 -6.7565 -3.4183 15 1 5.5505 -5.9210 -4.2213 16 1 5.0974 -8.1632 -3.4175 17 1 3.2615 -6.6936 -4.0107 18 6 2.3583 -2.4900 0.0007 19 7 2.3249 -1.1047 0.0009 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.9807 2.1113 0.0004 24 1 6.2645 -1.7349 -1.0147 25 1 6.2486 -0.8467 0.5278 26 1 6.2674 -2.6266 0.5258 27 1 3.4299 -4.9222 0.5910 28 1 5.1096 -4.3544 0.4355 29 1 5.2185 -7.8048 -0.8444 30 1 1.4973 -3.1420 0.0018 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259736480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:11 Heat of formation + Delta-G solvation = 95.191169 kcal Electronic energy + Delta-G solvation = -14401.264845 eV Core-core repulsion = 12005.362102 eV Total energy + Delta-G solvation = -2395.902743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.18167 -39.62602 -35.36265 -34.96561 -32.58456 -32.15041 -28.94167 -27.71908 -26.43185 -25.31181 -21.94230 -21.28193 -21.14850 -18.61795 -17.33404 -17.25157 -16.84908 -16.64712 -15.42675 -15.07977 -14.91257 -14.39897 -14.09409 -13.85328 -13.66839 -13.39412 -13.21980 -13.16642 -12.79590 -12.61439 -12.37327 -11.94017 -11.70871 -11.41603 -10.92211 -10.63885 -9.18462 -8.39131 -8.23534 -6.37847 0.87319 1.28346 1.42163 1.42355 1.49739 1.54592 2.07806 2.19159 2.40291 3.08021 3.48344 3.73728 4.16436 4.21608 4.35236 4.39498 4.43292 4.60851 4.71318 4.83277 4.94482 5.00124 5.11234 5.23467 5.42494 5.65232 5.66891 5.78249 6.02786 6.26927 6.49975 6.70227 7.14863 7.31331 8.83477 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.039314 B = 0.007596 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.044188 B = 3685.129119 C = 3981.626167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.082 4.082 3 C 0.011 3.989 4 N -0.544 5.544 5 C 0.349 3.651 6 N -0.487 5.487 7 C 0.101 3.899 8 C 0.121 3.879 9 C 0.093 3.907 10 C -0.534 4.534 11 H 0.050 0.950 12 C 0.020 3.980 13 N -0.920 5.920 14 Si 0.959 3.041 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.270 1.270 18 C -0.088 4.088 19 N -0.404 5.404 20 H 0.076 0.924 21 H 0.104 0.896 22 H 0.056 0.944 23 H 0.211 0.789 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.040 0.960 28 H 0.028 0.972 29 H 0.269 0.731 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 9.514 1.240 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.195 4.195 3 C -0.138 4.138 4 N -0.275 5.275 5 C 0.001 3.999 6 N -0.185 5.185 7 C -0.040 4.040 8 C 0.014 3.986 9 C 0.055 3.945 10 C -0.572 4.572 11 H 0.068 0.932 12 C -0.180 4.180 13 N -0.559 5.559 14 Si 0.784 3.216 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.196 1.196 18 C -0.210 4.210 19 N -0.082 5.082 20 H 0.095 0.905 21 H 0.123 0.877 22 H 0.075 0.925 23 H 0.228 0.772 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.142 9.783 1.294 10.702 hybrid contribution -0.347 -1.164 -0.786 1.447 sum -4.489 8.619 0.508 9.731 Atomic orbital electron populations 1.20149 0.84457 1.03838 1.03099 1.21352 0.95796 0.83141 1.19180 1.22600 0.85913 0.99614 1.05661 1.70192 1.24017 1.02440 1.30832 1.20802 0.81195 0.88886 1.08993 1.43634 1.07040 1.00657 1.67172 1.21944 0.73524 1.04823 1.03698 1.21280 0.88072 0.90306 0.98961 1.17747 0.96927 0.82340 0.97493 1.21150 1.45833 0.97927 0.92250 0.93188 1.25693 0.94340 0.96778 1.01178 1.70012 1.44502 1.08439 1.32908 0.85590 0.78790 0.77439 0.79803 1.19796 1.20383 1.19556 1.21310 0.98452 0.80467 1.20782 1.43757 1.08616 1.06011 1.49852 0.90496 0.87692 0.92542 0.77190 0.91138 0.88670 0.88784 0.94208 0.95353 0.92210 0.79142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.28 10.44 71.24 0.74 -0.54 16 2 C -0.08 -2.69 7.25 40.86 0.30 -2.39 16 3 C 0.01 0.35 11.77 83.52 0.98 1.33 16 4 N -0.54 -21.66 11.30 -198.21 -2.24 -23.90 16 5 C 0.35 14.62 9.18 260.55 2.39 17.01 16 6 N -0.49 -19.93 3.25 -535.52 -1.74 -21.67 16 7 C 0.10 3.33 11.00 127.77 1.41 4.74 16 8 C 0.12 5.24 6.08 40.36 0.25 5.49 16 9 C 0.09 4.45 5.26 29.10 0.15 4.60 16 10 C -0.53 -28.01 9.09 25.60 0.23 -27.78 16 11 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 12 C 0.02 1.06 5.46 84.66 0.46 1.52 16 13 N -0.92 -50.70 13.29 21.45 0.28 -50.42 16 14 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 C -0.09 -3.54 11.79 82.45 0.97 -2.57 16 19 N -0.40 -16.01 3.53 -343.00 -1.21 -17.22 16 20 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 21 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.21 4.81 8.06 -2.91 -0.02 4.79 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 26 H 0.09 2.99 7.04 -2.39 -0.02 2.98 16 27 H 0.04 1.97 8.14 -2.38 -0.02 1.96 16 28 H 0.03 1.39 7.01 -2.39 -0.02 1.38 16 29 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.19 6.81 8.06 -2.91 -0.02 6.79 16 Total: -1.00 -63.82 264.60 6.14 -57.69 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.13 Total: 10.36 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 7.88 Total: 1.42 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.90 Total: -113.21 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -63.82 6.14 -57.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.877 kcal (2) G-P(sol) polarization free energy of solvation -63.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds