Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.40040 * 110.99922 * 2 1 4 4 C 1.39403 * 129.95667 * 283.50754 * 3 2 1 5 5 C 1.37902 * 120.19854 * 179.51689 * 4 3 2 6 6 C 1.38307 * 120.26411 * 359.96795 * 5 4 3 7 7 C 1.38303 * 119.88286 * 0.16698 * 6 5 4 8 8 C 1.37920 * 120.07823 * 0.27516 * 7 6 5 9 9 C 1.51571 * 131.55878 * 179.69420 * 8 7 6 10 10 H 1.09007 * 110.73937 * 314.03561 * 9 8 7 11 11 O 1.42899 * 110.95174 * 77.32618 * 9 8 7 12 12 C 1.47910 * 111.00008 * 119.96126 * 2 1 3 13 13 H 1.09006 * 110.77885 * 147.04558 * 12 2 1 14 14 C 1.50696 * 110.78000 * 23.80318 * 12 2 1 15 15 H 1.08000 * 120.00179 * 241.45201 * 14 12 2 16 16 C 1.37878 * 120.00221 * 61.45766 * 14 12 2 17 17 N 1.31516 * 119.99944 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00170 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47192 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47327 * 119.99608 * 18 16 14 21 21 H 1.48494 * 109.46984 * 239.99664 * 18 16 14 22 22 H 1.08996 * 109.47203 * 59.87589 * 1 2 3 23 23 H 1.09000 * 109.46951 * 179.87750 * 1 2 3 24 24 H 1.09003 * 109.47302 * 299.87163 * 1 2 3 25 25 H 1.08006 * 119.89676 * 359.54770 * 4 3 2 26 26 H 1.08004 * 119.86819 * 179.97438 * 5 4 3 27 27 H 1.08003 * 120.05686 * 180.14680 * 6 5 4 28 28 H 1.08002 * 119.95633 * 179.97438 * 7 6 5 29 29 H 0.96696 * 114.00634 * 293.47043 * 11 9 8 30 30 H 0.97000 * 120.00046 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9708 1.3074 0.0000 4 6 2.0586 2.2326 -1.0390 5 6 2.5875 3.4854 -0.8094 6 6 3.0338 3.8330 0.4527 7 6 2.9526 2.9196 1.4880 8 6 2.4329 1.6623 1.2615 9 6 2.2302 0.4769 2.1841 10 1 3.1206 0.3009 2.7877 11 8 1.0856 0.6683 3.0180 12 6 1.9991 -0.6896 1.1963 13 1 2.9360 -1.1972 0.9667 14 6 0.9872 -1.6623 1.7450 15 1 0.6002 -1.5323 2.7449 16 6 0.5554 -2.7181 0.9706 17 7 1.0263 -2.8762 -0.2472 18 14 -0.6994 -3.9234 1.6504 19 1 -1.0682 -3.5266 3.0332 20 1 -1.9112 -3.9131 0.7922 21 1 -0.1159 -5.2888 1.6667 22 1 -0.3633 0.5157 -0.8888 23 1 -0.3633 -1.0277 -0.0022 24 1 -0.3634 0.5118 0.8911 25 1 1.7109 1.9677 -2.0266 26 1 2.6534 4.1979 -1.6184 27 1 3.4452 4.8158 0.6293 28 1 3.3011 3.1897 2.4740 29 1 1.1797 1.3889 3.6559 30 1 0.7223 -3.6188 -0.7922 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259751415.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = -15.187363 kcal Electronic energy + Delta-G solvation = -15082.516825 eV Core-core repulsion = 12649.534959 eV Total energy + Delta-G solvation = -2432.981866 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.60432 -38.01794 -36.64832 -34.46481 -32.24538 -30.50420 -29.92862 -26.85601 -25.98234 -23.10284 -21.99284 -21.44658 -18.90472 -17.93205 -17.33515 -16.81652 -16.53107 -15.81387 -15.12854 -14.92112 -14.64101 -14.40538 -14.07574 -13.92421 -13.34094 -13.03162 -12.82549 -12.65194 -12.36262 -12.16700 -11.99331 -11.67102 -11.07667 -10.82249 -10.45852 -9.94562 -9.70780 -8.50454 -8.10605 -6.25009 0.48416 0.57366 1.39575 1.42772 1.54512 2.42124 2.85981 3.03508 3.45776 3.63791 3.79229 4.05582 4.27290 4.35915 4.45572 4.59905 4.74905 4.81741 4.92807 4.99528 5.14773 5.39575 5.49515 5.56812 5.63920 5.68818 5.80823 5.98081 6.13608 6.46108 6.78133 6.97310 7.06069 7.44563 8.95050 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048489 B = 0.009936 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.308818 B = 2817.265355 C = 3147.995743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.493 5.493 3 C 0.084 3.916 4 C -0.150 4.150 5 C -0.092 4.092 6 C -0.148 4.148 7 C -0.081 4.081 8 C -0.207 4.207 9 C 0.128 3.872 10 H 0.064 0.936 11 O -0.549 6.549 12 C 0.208 3.792 13 H 0.029 0.971 14 C -0.524 4.524 15 H 0.064 0.936 16 C 0.028 3.972 17 N -0.890 5.890 18 Si 0.950 3.050 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.117 0.883 26 H 0.156 0.844 27 H 0.159 0.841 28 H 0.141 0.859 29 H 0.374 0.626 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 11.823 2.012 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.209 5.209 3 C -0.014 4.014 4 C -0.170 4.170 5 C -0.110 4.110 6 C -0.166 4.166 7 C -0.099 4.099 8 C -0.211 4.211 9 C 0.067 3.933 10 H 0.082 0.918 11 O -0.354 6.354 12 C 0.103 3.897 13 H 0.047 0.953 14 C -0.563 4.563 15 H 0.082 0.918 16 C -0.174 4.174 17 N -0.527 5.527 18 Si 0.775 3.225 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.204 1.204 22 H 0.057 0.943 23 H 0.090 0.910 24 H 0.030 0.970 25 H 0.135 0.865 26 H 0.173 0.827 27 H 0.176 0.824 28 H 0.159 0.841 29 H 0.222 0.778 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.174 10.849 1.031 11.113 hybrid contribution -0.547 -0.328 0.986 1.174 sum 1.627 10.521 2.016 10.835 Atomic orbital electron populations 1.21883 0.86017 1.02163 0.96743 1.60179 1.08623 1.09345 1.42760 1.20453 0.96562 0.90101 0.94236 1.20752 1.04447 0.94246 0.97540 1.21260 0.96511 0.94823 0.98435 1.21357 1.02421 1.00445 0.92425 1.20729 0.97594 0.90961 1.00649 1.21943 1.05884 0.97281 0.95958 1.21826 0.88005 0.92533 0.90900 0.91807 1.86781 1.39903 1.56940 1.51768 1.20190 0.95792 0.90433 0.83264 0.95277 1.21047 1.25047 1.09143 1.01084 0.91801 1.25689 0.98136 0.98619 0.94930 1.70249 1.43143 1.30267 1.09090 0.85639 0.79198 0.78930 0.78708 1.19458 1.20457 1.20443 0.94330 0.90951 0.96952 0.86523 0.82668 0.82357 0.84116 0.77849 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.92 8.30 127.69 1.06 4.98 16 2 N -0.49 -25.31 4.91 -693.82 -3.41 -28.72 16 3 C 0.08 3.71 5.59 38.28 0.21 3.92 16 4 C -0.15 -5.44 10.07 22.47 0.23 -5.21 16 5 C -0.09 -2.53 10.02 22.21 0.22 -2.31 16 6 C -0.15 -3.75 10.06 22.30 0.22 -3.53 16 7 C -0.08 -2.42 10.03 22.21 0.22 -2.19 16 8 C -0.21 -8.18 5.93 -19.49 -0.12 -8.29 16 9 C 0.13 5.54 4.20 30.67 0.13 5.67 16 10 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 11 O -0.55 -22.90 11.13 -148.98 -1.66 -24.55 16 12 C 0.21 11.05 3.17 44.52 0.14 11.19 16 13 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 14 C -0.52 -29.30 6.80 25.60 0.17 -29.13 16 15 H 0.06 3.64 6.79 -2.91 -0.02 3.62 16 16 C 0.03 1.57 3.63 84.65 0.31 1.88 16 17 N -0.89 -51.74 12.18 21.45 0.26 -51.47 16 18 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.07 3.98 4.80 -2.39 -0.01 3.97 16 24 H 0.01 0.61 7.52 -2.39 -0.02 0.59 16 25 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 26 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 27 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.37 11.23 9.12 -74.06 -0.68 10.56 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -66.40 250.07 0.50 -65.90 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.47 Total: 15.97 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 2.81 Total: -23.04 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -3.15 Total: -80.19 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -1.66 Total: -24.55 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.40 0.50 -65.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751415.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.715 kcal (2) G-P(sol) polarization free energy of solvation -66.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds