Wall clock time and date at job start Mon Mar 30 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.40039 * 110.99878 * 2 1 4 4 C 1.39410 * 129.95237 * 283.44783 * 3 2 1 5 5 C 1.37907 * 120.19349 * 179.65381 * 4 3 2 6 6 C 1.38304 * 120.26783 * 0.02562 * 5 4 3 7 7 C 1.38296 * 119.88359 * 0.14664 * 6 5 4 8 8 C 1.37921 * 120.07938 * 359.96677 * 7 6 5 9 9 C 1.51573 * 131.55747 * 179.32098 * 8 7 6 10 10 H 1.09000 * 110.74300 * 77.99729 * 9 8 7 11 11 O 1.42903 * 110.74193 * 314.66881 * 9 8 7 12 12 C 1.47905 * 110.99744 * 119.96921 * 2 1 3 13 13 H 1.08999 * 110.78251 * 147.00213 * 12 2 1 14 14 C 1.50699 * 110.78206 * 23.75946 * 12 2 1 15 15 H 1.07999 * 120.00803 * 241.45384 * 14 12 2 16 16 C 1.37881 * 119.99889 * 61.45205 * 14 12 2 17 17 N 1.31520 * 120.00186 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 120.00030 * 0.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 H 1.09000 * 109.47026 * 300.03059 * 1 2 3 23 23 H 1.09005 * 109.47034 * 60.02936 * 1 2 3 24 24 H 1.08997 * 109.47045 * 180.02562 * 1 2 3 25 25 H 1.07993 * 119.90322 * 359.64085 * 4 3 2 26 26 H 1.08001 * 119.86394 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.05774 * 180.12316 * 6 5 4 28 28 H 1.07997 * 119.96164 * 179.97438 * 7 6 5 29 29 H 0.96700 * 113.99527 * 66.58792 * 11 9 8 30 30 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9709 1.3074 0.0000 4 6 2.0597 2.2322 -1.0394 5 6 2.5909 3.4841 -0.8104 6 6 3.0397 3.8308 0.4510 7 6 2.9583 2.9177 1.4865 8 6 2.4300 1.6636 1.2622 9 6 2.2316 0.4766 2.1838 10 1 1.3587 0.6234 2.8199 11 8 3.4011 0.2469 2.9721 12 6 1.9990 -0.6898 1.1962 13 1 2.9356 -1.1979 0.9665 14 6 0.9867 -1.6617 1.7454 15 1 0.6001 -1.5315 2.7454 16 6 0.5540 -2.7174 0.9711 17 7 -0.3298 -3.5654 1.4502 18 14 1.2231 -2.9432 -0.7582 19 1 2.4366 -3.7979 -0.7119 20 1 1.5725 -1.6183 -1.3308 21 1 0.1922 -3.5929 -1.6070 22 1 -0.3633 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8903 24 1 -0.3633 -1.0276 0.0005 25 1 1.7116 1.9675 -2.0268 26 1 2.6567 4.1965 -1.6194 27 1 3.4532 4.8128 0.6270 28 1 3.3087 3.1870 2.4719 29 1 3.5911 0.9502 3.6081 30 1 -0.6340 -4.3082 0.9056 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259751418.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:57 Heat of formation + Delta-G solvation = 12.132388 kcal Electronic energy + Delta-G solvation = -15058.645602 eV Core-core repulsion = 12626.848409 eV Total energy + Delta-G solvation = -2431.797193 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.30193 -36.67203 -35.56787 -32.58471 -30.86203 -29.41795 -28.50894 -25.23895 -24.52798 -21.49492 -20.83372 -19.69769 -17.39879 -16.72621 -16.17221 -15.30953 -14.85047 -14.23747 -13.74377 -13.63059 -13.20288 -12.91676 -12.79621 -12.31208 -12.10730 -11.81867 -11.23224 -10.91582 -10.71286 -10.31988 -10.15766 -9.79238 -9.66863 -9.37913 -8.81150 -8.51614 -8.46447 -7.05329 -6.21777 -4.28019 1.69645 1.75822 3.35353 3.45312 3.72352 4.05564 4.45940 4.48980 4.99980 5.07474 5.22780 5.25388 5.33712 5.64802 5.75788 5.87878 6.08367 6.17024 6.27828 6.37091 6.44688 6.69344 6.78879 6.92732 6.95828 7.14406 7.19565 7.37114 7.75747 8.03971 8.21920 8.38860 8.79127 9.37995 10.87115 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037430 B = 0.011690 C = 0.009871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.877197 B = 2394.693360 C = 2835.945308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.498 5.498 3 C 0.117 3.883 4 C -0.130 4.130 5 C -0.105 4.105 6 C -0.153 4.153 7 C -0.085 4.085 8 C -0.181 4.181 9 C 0.132 3.868 10 H 0.070 0.930 11 O -0.549 6.549 12 C 0.187 3.813 13 H 0.066 0.934 14 C -0.530 4.530 15 H 0.079 0.921 16 C 0.085 3.915 17 N -0.886 5.886 18 Si 0.843 3.157 19 H -0.284 1.284 20 H -0.196 1.196 21 H -0.292 1.292 22 H 0.029 0.971 23 H 0.042 0.958 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.363 0.637 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 12.339 -2.715 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.217 5.217 3 C 0.020 3.980 4 C -0.150 4.150 5 C -0.124 4.124 6 C -0.171 4.171 7 C -0.104 4.104 8 C -0.184 4.184 9 C 0.072 3.928 10 H 0.088 0.912 11 O -0.351 6.351 12 C 0.083 3.917 13 H 0.084 0.916 14 C -0.568 4.568 15 H 0.097 0.903 16 C -0.121 4.121 17 N -0.521 5.521 18 Si 0.668 3.332 19 H -0.210 1.210 20 H -0.118 1.118 21 H -0.219 1.219 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.208 0.792 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.957 11.284 -3.568 12.478 hybrid contribution 0.038 0.591 0.188 0.621 sum 3.995 11.875 -3.380 12.977 Atomic orbital electron populations 1.22212 0.85287 1.03909 0.98330 1.61188 1.09069 1.08789 1.42686 1.19994 0.95486 0.90248 0.92311 1.20518 1.03242 0.93201 0.98019 1.20815 0.98831 0.95835 0.96882 1.20861 1.03678 0.99229 0.93369 1.20287 0.99026 0.92310 0.98781 1.22053 1.03135 0.96044 0.97121 1.22103 0.87136 0.92234 0.91340 0.91196 1.86612 1.46094 1.48389 1.54029 1.20634 0.97705 0.90653 0.82725 0.91624 1.20811 1.24394 1.09033 1.02560 0.90312 1.25007 0.93721 0.94406 0.98923 1.69916 1.29911 1.14530 1.37772 0.87539 0.78814 0.82071 0.84769 1.21032 1.11787 1.21880 0.95238 0.93918 0.88800 0.86346 0.86345 0.86512 0.86990 0.79167 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.02 7.72 60.07 0.46 1.49 16 2 N -0.50 -11.16 2.87 -170.65 -0.49 -11.65 16 3 C 0.12 2.35 5.59 -83.41 -0.47 1.88 16 4 C -0.13 -2.20 10.07 -39.27 -0.40 -2.60 16 5 C -0.10 -1.51 10.02 -39.68 -0.40 -1.90 16 6 C -0.15 -2.14 10.06 -39.54 -0.40 -2.54 16 7 C -0.09 -1.34 10.03 -39.68 -0.40 -1.74 16 8 C -0.18 -3.45 5.92 -104.04 -0.62 -4.07 16 9 C 0.13 2.78 3.90 -26.62 -0.10 2.68 16 10 H 0.07 1.49 7.81 -51.93 -0.41 1.09 16 11 O -0.55 -10.79 13.40 -35.23 -0.47 -11.27 16 12 C 0.19 4.53 2.32 -67.48 -0.16 4.38 16 13 H 0.07 1.71 7.68 -51.93 -0.40 1.31 16 14 C -0.53 -14.48 7.74 -34.44 -0.27 -14.74 16 15 H 0.08 2.34 7.91 -52.49 -0.42 1.92 16 16 C 0.08 2.36 4.21 -17.82 -0.08 2.28 16 17 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 18 Si 0.84 20.71 25.34 -169.99 -4.31 16.40 16 19 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.20 -4.61 5.14 56.52 0.29 -4.32 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.09 2.23 4.08 -51.93 -0.21 2.01 16 25 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 26 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 28 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.36 5.12 9.12 45.56 0.42 5.53 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 245.91 15.07 3.71 3.71 Total: -1.00 -30.71 245.91 -6.40 -37.11 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -2.80 Total: 5.93 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.81 Total: -14.89 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.28 Total: -36.98 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.47 Total: -11.27 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.31 Total: 16.40 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.71 -6.40 -37.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751418.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.243 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds