Wall clock time and date at job start Mon Mar 30 2020 02:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.40032 * 110.99841 * 2 1 4 4 C 1.39404 * 129.95646 * 76.15533 * 3 2 1 5 5 C 1.37901 * 120.20193 * 180.71455 * 4 3 2 6 6 C 1.38305 * 120.26837 * 359.97438 * 5 4 3 7 7 C 1.38310 * 119.87872 * 359.87428 * 6 5 4 8 8 C 1.37917 * 120.08166 * 0.02562 * 7 6 5 9 9 C 1.51570 * 131.55983 * 180.27297 * 8 7 6 10 10 H 1.09002 * 110.73945 * 45.68340 * 9 8 7 11 11 O 1.42900 * 110.74051 * 282.53376 * 9 8 7 12 12 C 1.47917 * 110.99531 * 240.02819 * 2 1 3 13 13 H 1.09001 * 110.77760 * 212.80865 * 12 2 1 14 14 C 1.50700 * 110.78029 * 336.24436 * 12 2 1 15 15 H 1.07996 * 120.00230 * 113.20449 * 14 12 2 16 16 C 1.37876 * 119.99850 * 293.20392 * 14 12 2 17 17 N 1.31517 * 120.00260 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99967 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46822 * 59.99924 * 18 16 14 20 20 H 1.48497 * 109.46732 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46859 * 300.00190 * 18 16 14 22 22 H 1.08998 * 109.47659 * 60.11995 * 1 2 3 23 23 H 1.09001 * 109.47083 * 180.12907 * 1 2 3 24 24 H 1.09004 * 109.46434 * 300.11899 * 1 2 3 25 25 H 1.08001 * 119.89339 * 0.71409 * 4 3 2 26 26 H 1.08007 * 119.86824 * 179.97438 * 5 4 3 27 27 H 1.07993 * 120.06351 * 179.84502 * 6 5 4 28 28 H 1.08000 * 119.95803 * 179.97438 * 7 6 5 29 29 H 0.96704 * 113.99517 * 63.89382 * 11 9 8 30 30 H 0.96997 * 120.00134 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9708 1.3073 0.0000 4 6 2.0529 2.2348 1.0375 5 6 2.5786 3.4887 0.8072 6 6 3.0285 3.8350 -0.4539 7 6 2.9534 2.9194 -1.4878 8 6 2.4304 1.6634 -1.2623 9 6 2.2319 0.4764 -2.1838 10 1 3.1242 0.3009 -2.7847 11 8 1.0903 0.6711 -3.0210 12 6 1.9990 -0.6899 -1.1963 13 1 2.9372 -1.1953 -0.9673 14 6 0.9866 -1.6618 -1.7454 15 1 0.5357 -1.4841 -2.7105 16 6 0.6360 -2.7778 -1.0157 17 7 1.1847 -2.9940 0.1599 18 14 -0.6184 -3.9829 -1.6966 19 1 -0.1254 -4.5360 -2.9836 20 1 -0.8185 -5.0896 -0.7270 21 1 -1.9078 -3.2812 -1.9209 22 1 -0.3634 0.5119 -0.8910 23 1 -0.3633 -1.0277 0.0023 24 1 -0.3632 0.5157 0.8890 25 1 1.7037 1.9704 2.0247 26 1 2.6393 4.2032 1.6149 27 1 3.4373 4.8188 -0.6312 28 1 3.3039 3.1887 -2.4732 29 1 1.1725 1.4171 -3.6307 30 1 0.9378 -3.7789 0.6734 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259752303.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:59 Heat of formation + Delta-G solvation = 3.289959 kcal Electronic energy + Delta-G solvation = -15056.658571 eV Core-core repulsion = 12624.477941 eV Total energy + Delta-G solvation = -2432.180629 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.02214 -36.50585 -34.94703 -32.48495 -30.77342 -28.97524 -28.13428 -25.02820 -24.23418 -21.53088 -20.54790 -19.72147 -17.14195 -16.06264 -15.82238 -15.21225 -14.75652 -14.24079 -13.46197 -13.32123 -13.11182 -12.78745 -12.38851 -12.06736 -11.70108 -11.45851 -11.11390 -10.84145 -10.66176 -10.55815 -10.17986 -9.75698 -9.26651 -9.15067 -8.56438 -8.38494 -8.25937 -6.83614 -6.04828 -4.12733 1.84984 1.95534 3.30723 3.35794 3.39266 4.24619 4.39092 4.78777 5.19333 5.25641 5.36960 5.44641 5.49376 5.82237 5.93664 6.02945 6.31337 6.37487 6.49897 6.65611 6.84447 6.92233 6.95354 7.15912 7.26602 7.44766 7.51064 7.86024 7.94374 8.27784 8.42398 8.67022 9.01241 9.52679 11.01036 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048473 B = 0.009827 C = 0.008843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.503485 B = 2848.618953 C = 3165.623876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.478 5.478 3 C 0.131 3.869 4 C -0.138 4.138 5 C -0.101 4.101 6 C -0.164 4.164 7 C -0.082 4.082 8 C -0.195 4.195 9 C 0.120 3.880 10 H 0.054 0.946 11 O -0.531 6.531 12 C 0.220 3.780 13 H 0.068 0.932 14 C -0.517 4.517 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.863 5.863 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.025 0.975 23 H 0.092 0.908 24 H 0.027 0.973 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.351 0.649 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 9.534 -1.426 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.193 5.193 3 C 0.032 3.968 4 C -0.158 4.158 5 C -0.119 4.119 6 C -0.183 4.183 7 C -0.101 4.101 8 C -0.198 4.198 9 C 0.060 3.940 10 H 0.071 0.929 11 O -0.333 6.333 12 C 0.116 3.884 13 H 0.086 0.914 14 C -0.556 4.556 15 H 0.093 0.907 16 C -0.136 4.136 17 N -0.499 5.499 18 Si 0.718 3.282 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.044 0.956 23 H 0.111 0.889 24 H 0.046 0.954 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.195 0.805 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.527 8.496 -0.450 8.644 hybrid contribution -0.483 0.300 -1.121 1.257 sum 1.043 8.796 -1.571 8.996 Atomic orbital electron populations 1.22032 0.85377 1.03537 0.97003 1.60440 1.08779 1.07068 1.43040 1.20207 0.94095 0.90341 0.92177 1.20521 1.03829 0.93281 0.98175 1.20795 0.98584 0.95793 0.96757 1.20799 1.04835 0.99159 0.93550 1.20338 0.98770 0.92506 0.98492 1.22004 1.04371 0.96230 0.97206 1.22182 0.87804 0.93031 0.90979 0.92859 1.86847 1.40852 1.52544 1.53104 1.20417 0.97880 0.88891 0.81235 0.91398 1.20868 1.24455 1.05164 1.05120 0.90652 1.25066 0.96371 0.97375 0.94741 1.70080 1.41358 1.27204 1.11216 0.86683 0.82035 0.80630 0.78852 1.20108 1.21304 1.20067 0.95628 0.88913 0.95433 0.86529 0.86599 0.86803 0.87280 0.80526 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.58 8.44 60.07 0.51 2.08 16 2 N -0.48 -11.80 5.12 -170.65 -0.87 -12.67 16 3 C 0.13 2.86 5.59 -83.41 -0.47 2.40 16 4 C -0.14 -2.58 10.07 -39.27 -0.40 -2.98 16 5 C -0.10 -1.59 10.02 -39.68 -0.40 -1.98 16 6 C -0.16 -2.51 10.06 -39.53 -0.40 -2.90 16 7 C -0.08 -1.38 10.03 -39.67 -0.40 -1.78 16 8 C -0.19 -3.93 5.92 -104.04 -0.62 -4.55 16 9 C 0.12 2.59 4.20 -26.62 -0.11 2.48 16 10 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 11 O -0.53 -11.09 11.11 -35.23 -0.39 -11.48 16 12 C 0.22 5.60 3.08 -67.47 -0.21 5.39 16 13 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 14 C -0.52 -13.94 6.63 -34.44 -0.23 -14.17 16 15 H 0.08 2.08 6.68 -52.49 -0.35 1.73 16 16 C 0.07 1.88 3.77 -17.82 -0.07 1.82 16 17 N -0.86 -24.30 12.84 55.43 0.71 -23.58 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H 0.03 0.62 7.54 -51.93 -0.39 0.23 16 23 H 0.09 2.43 5.32 -51.93 -0.28 2.15 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 26 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.35 5.50 9.12 45.56 0.42 5.91 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 251.37 15.07 3.79 3.79 Total: -1.00 -29.59 251.37 -7.26 -36.85 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -2.70 Total: 5.39 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.78 Total: -14.20 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.16 Total: -36.25 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.39 Total: -11.48 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.59 -7.26 -36.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752303.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.142 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds