Wall clock time and date at job start Mon Mar 30 2020 02:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.40032 * 110.99841 * 2 1 4 4 C 1.39404 * 129.95646 * 76.15533 * 3 2 1 5 5 C 1.37901 * 120.20193 * 180.71455 * 4 3 2 6 6 C 1.38305 * 120.26837 * 359.97438 * 5 4 3 7 7 C 1.38310 * 119.87872 * 359.87428 * 6 5 4 8 8 C 1.37917 * 120.08166 * 0.02562 * 7 6 5 9 9 C 1.51570 * 131.55983 * 180.27297 * 8 7 6 10 10 H 1.09002 * 110.73945 * 45.68340 * 9 8 7 11 11 O 1.42900 * 110.74051 * 282.53376 * 9 8 7 12 12 C 1.47917 * 110.99531 * 240.02819 * 2 1 3 13 13 H 1.09001 * 110.77760 * 212.80865 * 12 2 1 14 14 C 1.50700 * 110.78029 * 336.24436 * 12 2 1 15 15 H 1.07996 * 120.00230 * 113.20449 * 14 12 2 16 16 C 1.37876 * 119.99850 * 293.20392 * 14 12 2 17 17 N 1.31517 * 120.00260 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99967 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46822 * 59.99924 * 18 16 14 20 20 H 1.48497 * 109.46732 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46859 * 300.00190 * 18 16 14 22 22 H 1.08998 * 109.47659 * 60.11995 * 1 2 3 23 23 H 1.09001 * 109.47083 * 180.12907 * 1 2 3 24 24 H 1.09004 * 109.46434 * 300.11899 * 1 2 3 25 25 H 1.08001 * 119.89339 * 0.71409 * 4 3 2 26 26 H 1.08007 * 119.86824 * 179.97438 * 5 4 3 27 27 H 1.07993 * 120.06351 * 179.84502 * 6 5 4 28 28 H 1.08000 * 119.95803 * 179.97438 * 7 6 5 29 29 H 0.96704 * 113.99517 * 63.89382 * 11 9 8 30 30 H 0.96997 * 120.00134 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9708 1.3073 0.0000 4 6 2.0529 2.2348 1.0375 5 6 2.5786 3.4887 0.8072 6 6 3.0285 3.8350 -0.4539 7 6 2.9534 2.9194 -1.4878 8 6 2.4304 1.6634 -1.2623 9 6 2.2319 0.4764 -2.1838 10 1 3.1242 0.3009 -2.7847 11 8 1.0903 0.6711 -3.0210 12 6 1.9990 -0.6899 -1.1963 13 1 2.9372 -1.1953 -0.9673 14 6 0.9866 -1.6618 -1.7454 15 1 0.5357 -1.4841 -2.7105 16 6 0.6360 -2.7778 -1.0157 17 7 1.1847 -2.9940 0.1599 18 14 -0.6184 -3.9829 -1.6966 19 1 -0.1254 -4.5360 -2.9836 20 1 -0.8185 -5.0896 -0.7270 21 1 -1.9078 -3.2812 -1.9209 22 1 -0.3634 0.5119 -0.8910 23 1 -0.3633 -1.0277 0.0023 24 1 -0.3632 0.5157 0.8890 25 1 1.7037 1.9704 2.0247 26 1 2.6393 4.2032 1.6149 27 1 3.4373 4.8188 -0.6312 28 1 3.3039 3.1887 -2.4732 29 1 1.1725 1.4171 -3.6307 30 1 0.9378 -3.7789 0.6734 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259752303.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:59 Heat of formation + Delta-G solvation = -18.198822 kcal Electronic energy + Delta-G solvation = -15057.590394 eV Core-core repulsion = 12624.477941 eV Total energy + Delta-G solvation = -2433.112453 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.60768 -38.00733 -36.63532 -34.46361 -32.24683 -30.54873 -29.90488 -26.87802 -25.98666 -23.10217 -22.00019 -21.45736 -18.91864 -17.88091 -17.33791 -16.81411 -16.56840 -15.81842 -15.15058 -14.92023 -14.65664 -14.41480 -14.08461 -13.90001 -13.32202 -13.04094 -12.82904 -12.63295 -12.39035 -12.16976 -12.00705 -11.64935 -11.09108 -10.83090 -10.52430 -9.96935 -9.71171 -8.52559 -8.11417 -6.25088 0.48089 0.56871 1.42387 1.42767 1.51289 2.42119 2.85540 3.02093 3.47338 3.63670 3.78315 4.05578 4.27114 4.35977 4.45145 4.59232 4.74125 4.81124 4.92201 4.98332 5.14622 5.36524 5.47833 5.55892 5.63611 5.68391 5.80526 5.97082 6.13675 6.46034 6.77878 6.95685 7.05069 7.44648 8.94945 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048473 B = 0.009827 C = 0.008843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.503485 B = 2848.618953 C = 3165.623876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.498 5.498 3 C 0.085 3.915 4 C -0.149 4.149 5 C -0.092 4.092 6 C -0.147 4.147 7 C -0.081 4.081 8 C -0.208 4.208 9 C 0.127 3.873 10 H 0.063 0.937 11 O -0.549 6.549 12 C 0.210 3.790 13 H 0.031 0.969 14 C -0.525 4.525 15 H 0.065 0.935 16 C 0.029 3.971 17 N -0.894 5.894 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.272 1.272 22 H 0.014 0.986 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.118 0.882 26 H 0.156 0.844 27 H 0.159 0.841 28 H 0.141 0.859 29 H 0.374 0.626 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 12.113 -1.836 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.214 5.214 3 C -0.013 4.013 4 C -0.169 4.169 5 C -0.110 4.110 6 C -0.166 4.166 7 C -0.100 4.100 8 C -0.211 4.211 9 C 0.067 3.933 10 H 0.081 0.919 11 O -0.355 6.355 12 C 0.105 3.895 13 H 0.048 0.952 14 C -0.563 4.563 15 H 0.083 0.917 16 C -0.173 4.173 17 N -0.531 5.531 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.198 1.198 22 H 0.033 0.967 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.136 0.864 26 H 0.174 0.826 27 H 0.176 0.824 28 H 0.159 0.841 29 H 0.222 0.778 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.902 11.110 -0.878 11.305 hybrid contribution -0.533 -0.330 -0.995 1.176 sum 1.369 10.780 -1.873 11.027 Atomic orbital electron populations 1.21810 0.86003 1.01673 0.97095 1.60252 1.08606 1.09552 1.43011 1.20423 0.96634 0.90018 0.94221 1.20758 1.04414 0.94149 0.97585 1.21263 0.96494 0.94851 0.98420 1.21360 1.02361 1.00406 0.92458 1.20730 0.97560 0.91003 1.00672 1.21954 1.05898 0.97265 0.95975 1.21839 0.88036 0.92599 0.90802 0.91943 1.86763 1.40829 1.54120 1.53746 1.20165 0.95841 0.90319 0.83161 0.95170 1.20977 1.24669 1.05990 1.04707 0.91734 1.25713 0.97895 0.98841 0.94869 1.70199 1.42811 1.27709 1.12370 0.85746 0.79815 0.78586 0.78299 1.19599 1.20840 1.19768 0.96739 0.91621 0.93929 0.86431 0.82642 0.82357 0.84130 0.77825 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.97 8.44 127.69 1.08 5.05 16 2 N -0.50 -25.40 5.12 -693.80 -3.55 -28.95 16 3 C 0.08 3.70 5.59 38.29 0.21 3.91 16 4 C -0.15 -5.35 10.07 22.47 0.23 -5.12 16 5 C -0.09 -2.50 10.02 22.21 0.22 -2.28 16 6 C -0.15 -3.70 10.06 22.30 0.22 -3.48 16 7 C -0.08 -2.41 10.03 22.21 0.22 -2.19 16 8 C -0.21 -8.15 5.92 -19.49 -0.12 -8.26 16 9 C 0.13 5.54 4.20 30.67 0.13 5.67 16 10 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 11 O -0.55 -22.84 11.11 -148.98 -1.66 -24.50 16 12 C 0.21 11.14 3.08 44.51 0.14 11.28 16 13 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 14 C -0.52 -29.32 6.63 25.60 0.17 -29.15 16 15 H 0.06 3.67 6.68 -2.91 -0.02 3.65 16 16 C 0.03 1.62 3.77 84.65 0.32 1.94 16 17 N -0.89 -52.26 12.84 21.45 0.28 -51.99 16 18 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H 0.01 0.71 7.54 -2.39 -0.02 0.69 16 23 H 0.07 3.57 5.32 -2.39 -0.01 3.56 16 24 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 26 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 27 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.37 11.22 9.12 -74.05 -0.68 10.55 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -66.44 251.37 0.39 -66.05 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.47 Total: 16.03 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 2.83 Total: -22.63 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -3.28 Total: -80.94 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.66 Total: -24.50 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.44 0.39 -66.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752303.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.851 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds