Wall clock time and date at job start Mon Mar 30 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.39279 * 125.69982 * 125.00413 * 3 2 1 5 5 C 1.37619 * 107.64978 * 179.97438 * 4 3 2 6 6 N 1.37916 * 145.16048 * 179.97438 * 5 4 3 7 7 H 0.97001 * 126.20446 * 0.02562 * 6 5 4 8 8 C 1.38189 * 107.59133 * 179.97438 * 6 5 4 9 9 C 1.50698 * 125.79764 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47405 * 265.03460 * 9 8 6 11 11 H 1.07994 * 120.00113 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99787 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99651 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00283 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47074 * 90.00267 * 14 12 10 16 16 H 1.48502 * 109.47067 * 210.00100 * 14 12 10 17 17 H 1.48500 * 109.46806 * 330.00001 * 14 12 10 18 18 C 1.32964 * 108.41231 * 0.02562 * 8 6 5 19 19 N 1.36062 * 107.34877 * 359.97438 * 5 4 3 20 20 N 1.31191 * 125.70106 * 304.69143 * 3 2 1 21 21 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 24 24 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 26 26 H 1.08002 * 126.17987 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.46973 * 25.02914 * 9 8 6 28 28 H 1.08994 * 109.47552 * 145.02715 * 9 8 6 29 29 H 0.97000 * 119.99720 * 179.97438 * 13 12 10 30 30 H 1.07997 * 125.67045 * 180.02562 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9149 1.9709 0.9265 5 6 3.1209 3.2859 0.5769 6 7 3.7764 4.4546 0.9032 7 1 4.3785 4.5838 1.6526 8 6 3.4209 5.4080 -0.0319 9 6 3.9029 6.8355 -0.0624 10 6 2.9020 7.7187 0.6370 11 1 2.0063 7.2895 1.0608 12 6 3.1300 9.0750 0.7357 13 7 2.2563 9.8459 1.3457 14 14 4.6797 9.8175 0.0033 15 1 4.4208 10.2152 -1.4039 16 1 5.0758 11.0127 0.7905 17 1 5.7745 8.8148 0.0409 18 6 2.5804 4.8523 -0.8995 19 7 2.3802 3.5301 -0.5381 20 7 1.7158 2.3448 -0.8760 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.3584 1.4579 1.7670 27 1 4.8654 6.9049 0.4445 28 1 4.0131 7.1597 -1.0972 29 1 2.4168 10.8000 1.4155 30 1 2.1294 5.3490 -1.7458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259757318.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:14 Heat of formation + Delta-G solvation = 113.899823 kcal Electronic energy + Delta-G solvation = -13988.926908 eV Core-core repulsion = 11593.835433 eV Total energy + Delta-G solvation = -2395.091475 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.26907 -37.96301 -33.80179 -33.05280 -31.64123 -30.48579 -28.14882 -26.76966 -23.90313 -22.43473 -21.19336 -20.13382 -18.97772 -17.03854 -16.71198 -15.51585 -15.34356 -14.61340 -14.08085 -13.91895 -13.72361 -13.18509 -12.54773 -12.45299 -12.16528 -11.98482 -11.67421 -11.38485 -11.11346 -10.83604 -10.65942 -10.24471 -10.03382 -9.79039 -9.57372 -8.77714 -8.19498 -6.90917 -6.25416 -4.28722 2.27636 2.70593 2.85365 3.15832 3.22975 3.24415 3.25414 3.38230 4.23635 4.84082 5.02648 5.05837 5.31110 5.42543 5.56019 5.72774 5.87229 5.95911 6.00963 6.09121 6.17960 6.22859 6.33025 6.50509 6.66049 6.88344 7.19887 7.37838 7.58298 7.78545 8.26815 8.40749 8.78391 9.31248 10.86887 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.067082 B = 0.005826 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.299194 B = 4805.292995 C = 4916.733234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.097 3.903 4 C -0.327 4.327 5 C 0.256 3.744 6 N -0.591 5.591 7 H 0.432 0.568 8 C 0.124 3.876 9 C 0.048 3.952 10 C -0.528 4.528 11 H 0.077 0.923 12 C 0.075 3.925 13 N -0.891 5.891 14 Si 0.878 3.122 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.033 4.033 19 N -0.302 5.302 20 N -0.315 5.315 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.268 0.732 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -13.605 -1.545 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.062 4.062 4 C -0.362 4.362 5 C 0.025 3.975 6 N -0.205 5.205 7 H 0.272 0.728 8 C 0.014 3.986 9 C 0.009 3.991 10 C -0.566 4.566 11 H 0.095 0.905 12 C -0.128 4.128 13 N -0.528 5.528 14 Si 0.704 3.296 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.189 1.189 18 C -0.157 4.157 19 N -0.073 5.073 20 N -0.141 5.141 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.158 0.842 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.271 -13.128 -2.646 13.584 hybrid contribution 1.461 0.616 0.853 1.801 sum 3.732 -12.512 -1.794 13.179 Atomic orbital electron populations 1.21710 0.94627 1.01301 1.02755 1.19883 0.96099 0.88607 1.02772 1.21880 0.95715 0.95818 0.92763 1.19674 1.16395 0.90438 1.09730 1.19777 0.95227 0.90418 0.92122 1.41778 1.43478 1.06803 1.28426 0.72833 1.21089 0.96952 0.92876 0.87636 1.18471 0.97653 0.83719 0.99210 1.20859 1.06782 0.91582 1.37360 0.90495 1.24962 0.96509 0.96849 0.94527 1.69885 1.35373 1.05467 1.42092 0.86814 0.83719 0.79274 0.79748 1.19782 1.20992 1.18938 1.21071 1.08182 0.79743 1.06680 1.47146 1.31753 1.08424 1.19936 1.77516 1.23022 0.88417 1.25183 0.92042 0.92512 0.92608 0.90524 0.90178 0.84187 0.94486 0.93408 0.92238 0.80095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.87 37.16 0.37 -1.29 16 2 C -0.03 -0.41 6.51 -27.88 -0.18 -0.59 16 3 C 0.10 1.63 6.46 -82.48 -0.53 1.10 16 4 C -0.33 -5.54 10.79 -39.42 -0.43 -5.97 16 5 C 0.26 4.85 8.63 -153.40 -1.32 3.53 16 6 N -0.59 -10.54 6.29 -8.32 -0.05 -10.59 16 7 H 0.43 6.35 8.96 -40.82 -0.37 5.98 16 8 C 0.12 2.46 6.34 -81.55 -0.52 1.94 16 9 C 0.05 1.02 4.57 -29.04 -0.13 0.89 16 10 C -0.53 -13.85 9.65 -34.44 -0.33 -14.19 16 11 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 14 Si 0.88 19.63 27.47 -169.99 -4.67 14.96 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 18 C -0.03 -0.67 11.78 -16.35 -0.19 -0.86 16 19 N -0.30 -6.20 4.73 -11.94 -0.06 -6.26 16 20 N -0.31 -6.23 12.65 33.61 0.43 -5.80 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 26 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.04 0.75 7.20 -51.93 -0.37 0.38 16 28 H 0.05 0.97 7.57 -51.93 -0.39 0.58 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.18 3.28 8.06 -52.49 -0.42 2.86 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -30.98 262.75 -6.67 -37.64 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.68 Total: 4.77 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.37 Total: -13.52 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 1.09 Total: -47.80 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.98 -6.67 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757318.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.543 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds