Wall clock time and date at job start Mon Mar 30 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.39279 * 125.69982 * 125.00413 * 3 2 1 5 5 C 1.37619 * 107.64978 * 179.97438 * 4 3 2 6 6 N 1.37916 * 145.16048 * 179.97438 * 5 4 3 7 7 H 0.97001 * 126.20446 * 0.02562 * 6 5 4 8 8 C 1.38189 * 107.59133 * 179.97438 * 6 5 4 9 9 C 1.50698 * 125.79764 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47405 * 265.03460 * 9 8 6 11 11 H 1.07994 * 120.00113 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99787 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99651 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00283 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47074 * 90.00267 * 14 12 10 16 16 H 1.48502 * 109.47067 * 210.00100 * 14 12 10 17 17 H 1.48500 * 109.46806 * 330.00001 * 14 12 10 18 18 C 1.32964 * 108.41231 * 0.02562 * 8 6 5 19 19 N 1.36062 * 107.34877 * 359.97438 * 5 4 3 20 20 N 1.31191 * 125.70106 * 304.69143 * 3 2 1 21 21 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 24 24 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 26 26 H 1.08002 * 126.17987 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.46973 * 25.02914 * 9 8 6 28 28 H 1.08994 * 109.47552 * 145.02715 * 9 8 6 29 29 H 0.97000 * 119.99720 * 179.97438 * 13 12 10 30 30 H 1.07997 * 125.67045 * 180.02562 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9149 1.9709 0.9265 5 6 3.1209 3.2859 0.5769 6 7 3.7764 4.4546 0.9032 7 1 4.3785 4.5838 1.6526 8 6 3.4209 5.4080 -0.0319 9 6 3.9029 6.8355 -0.0624 10 6 2.9020 7.7187 0.6370 11 1 2.0063 7.2895 1.0608 12 6 3.1300 9.0750 0.7357 13 7 2.2563 9.8459 1.3457 14 14 4.6797 9.8175 0.0033 15 1 4.4208 10.2152 -1.4039 16 1 5.0758 11.0127 0.7905 17 1 5.7745 8.8148 0.0409 18 6 2.5804 4.8523 -0.8995 19 7 2.3802 3.5301 -0.5381 20 7 1.7158 2.3448 -0.8760 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.3584 1.4579 1.7670 27 1 4.8654 6.9049 0.4445 28 1 4.0131 7.1597 -1.0972 29 1 2.4168 10.8000 1.4155 30 1 2.1294 5.3490 -1.7458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259757318.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:14 Heat of formation + Delta-G solvation = 94.617289 kcal Electronic energy + Delta-G solvation = -13989.763061 eV Core-core repulsion = 11593.835433 eV Total energy + Delta-G solvation = -2395.927628 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.70304 -39.35911 -35.42395 -34.53587 -33.12212 -32.10777 -29.58478 -28.29870 -25.34129 -23.92819 -22.61929 -21.64626 -20.31098 -19.04834 -18.14356 -16.92495 -16.75059 -16.41516 -15.48376 -15.07698 -14.95037 -14.81806 -14.16761 -13.83373 -13.66772 -13.51542 -13.00538 -12.59061 -12.43886 -12.29108 -12.07660 -11.89027 -11.67690 -11.35445 -11.15588 -10.81097 -9.68448 -8.35699 -8.30013 -6.40643 0.82418 1.29280 1.37229 1.43484 1.43724 1.54296 1.88195 1.97644 2.35556 3.03747 3.55519 3.86303 4.12595 4.30682 4.45137 4.47523 4.60401 4.67156 4.73287 4.90495 4.95306 5.06683 5.10679 5.20106 5.38080 5.42433 5.45380 5.89610 6.15311 6.16523 6.43492 6.66726 6.99641 7.23592 8.84994 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.067082 B = 0.005826 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.299194 B = 4805.292995 C = 4916.733234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 C 0.099 3.901 4 C -0.327 4.327 5 C 0.241 3.759 6 N -0.583 5.583 7 H 0.444 0.556 8 C 0.114 3.886 9 C 0.056 3.944 10 C -0.531 4.531 11 H 0.025 0.975 12 C 0.013 3.987 13 N -0.947 5.947 14 Si 0.953 3.047 15 H -0.264 1.264 16 H -0.288 1.288 17 H -0.234 1.234 18 C -0.047 4.047 19 N -0.325 5.325 20 N -0.349 5.349 21 H 0.040 0.960 22 H 0.088 0.912 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.172 0.828 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.269 0.731 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 -15.267 -1.836 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.060 4.060 4 C -0.362 4.362 5 C 0.010 3.990 6 N -0.199 5.199 7 H 0.287 0.713 8 C 0.005 3.995 9 C 0.017 3.983 10 C -0.569 4.569 11 H 0.044 0.956 12 C -0.185 4.185 13 N -0.587 5.587 14 Si 0.776 3.224 15 H -0.189 1.189 16 H -0.214 1.214 17 H -0.157 1.157 18 C -0.171 4.171 19 N -0.096 5.096 20 N -0.176 5.176 21 H 0.059 0.941 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.128 0.872 26 H 0.189 0.811 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.136 -14.824 -2.925 15.665 hybrid contribution 0.762 1.002 0.987 1.599 sum 4.898 -13.822 -1.938 14.791 Atomic orbital electron populations 1.21689 0.94286 1.02890 1.01230 1.20142 0.96303 0.85854 1.04972 1.22747 0.94578 0.97212 0.91438 1.20217 1.15919 0.89678 1.10354 1.20296 0.95304 0.91308 0.92099 1.41703 1.43562 1.06178 1.28476 0.71325 1.20851 0.97575 0.92700 0.88422 1.18326 0.96842 0.83485 0.99623 1.21040 1.06197 0.92541 1.37146 0.95634 1.25970 1.00390 0.97263 0.94868 1.70059 1.38229 1.05945 1.44436 0.85622 0.79522 0.78571 0.78726 1.18886 1.21383 1.15683 1.21326 1.08221 0.80286 1.07218 1.47342 1.32755 1.08692 1.20854 1.77484 1.24264 0.88897 1.26991 0.94074 0.89356 0.93640 0.89005 0.87179 0.81057 0.92486 0.91620 0.92172 0.79386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.87 71.98 0.71 -2.23 16 2 C -0.03 -0.71 6.51 29.85 0.19 -0.51 16 3 C 0.10 3.16 6.46 42.91 0.28 3.44 16 4 C -0.33 -10.39 10.79 22.37 0.24 -10.15 16 5 C 0.24 8.90 8.63 131.94 1.14 10.04 16 6 N -0.58 -20.32 6.29 -180.24 -1.13 -21.46 16 7 H 0.44 12.49 8.96 -92.71 -0.83 11.66 16 8 C 0.11 4.50 6.34 40.39 0.26 4.76 16 9 C 0.06 2.30 4.57 29.10 0.13 2.43 16 10 C -0.53 -28.35 9.65 25.60 0.25 -28.10 16 11 H 0.03 1.58 7.98 -2.91 -0.02 1.55 16 12 C 0.01 0.71 5.47 84.65 0.46 1.17 16 13 N -0.95 -56.73 13.96 21.45 0.30 -56.43 16 14 Si 0.95 39.59 27.47 68.60 1.88 41.47 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 16 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.23 -8.50 6.54 99.48 0.65 -7.85 16 18 C -0.05 -1.89 11.78 82.46 0.97 -0.92 16 19 N -0.33 -13.35 4.73 -191.68 -0.91 -14.26 16 20 N -0.35 -13.69 12.65 -47.57 -0.60 -14.29 16 21 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.11 1.67 8.12 -2.39 -0.02 1.66 16 26 H 0.17 4.21 8.06 -2.91 -0.02 4.18 16 27 H 0.06 2.15 7.20 -2.39 -0.02 2.13 16 28 H 0.07 2.51 7.57 -2.39 -0.02 2.49 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.23 16 30 H 0.19 6.96 8.06 -2.91 -0.02 6.94 16 Total: -1.00 -68.83 262.75 4.43 -64.40 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.26 Total: 20.64 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 4.63 Total: -20.07 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -2.34 Total: -106.44 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.88 Total: 41.47 kcal Total: -68.83 4.43 -64.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757318.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.013 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds