Wall clock time and date at job start Mon Mar 30 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86798 * 120.00348 * 2 1 4 4 H 1.48504 * 109.46643 * 264.99007 * 3 2 1 5 5 H 1.48504 * 109.47269 * 24.98460 * 3 2 1 6 6 H 1.48496 * 109.47638 * 144.98686 * 3 2 1 7 7 C 1.40095 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99604 * 187.19578 * 7 2 1 9 9 C 1.41538 * 120.00001 * 7.18920 * 7 2 1 10 10 N 1.33744 * 119.73196 * 187.18598 * 9 7 2 11 11 C 1.32007 * 119.43669 * 180.02562 * 10 9 7 12 12 C 1.39208 * 118.93994 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.28462 * 180.02562 * 12 11 10 14 14 C 1.53876 * 110.02969 * 36.32771 * 13 12 11 15 15 C 1.54269 * 106.59435 * 240.71348 * 14 13 12 16 16 C 1.54889 * 104.19997 * 336.39033 * 15 14 13 17 17 C 1.54263 * 110.03016 * 279.15921 * 13 12 11 18 18 N 1.32525 * 119.43068 * 0.27675 * 12 11 10 19 19 N 1.28745 * 120.52495 * 359.41052 * 18 12 11 20 20 H 0.97004 * 119.99638 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.53161 * 180.02562 * 11 10 9 22 22 H 1.08997 * 110.05364 * 157.74493 * 13 12 11 23 23 H 1.08999 * 110.03509 * 359.97438 * 14 13 12 24 24 H 1.08996 * 110.03051 * 121.43712 * 14 13 12 25 25 H 1.09003 * 110.48549 * 95.07413 * 15 14 13 26 26 H 1.09001 * 110.48389 * 217.71163 * 15 14 13 27 27 H 1.08998 * 110.76060 * 279.63037 * 16 15 14 28 28 H 1.08999 * 110.91403 * 156.32336 * 16 15 14 29 29 H 1.08996 * 110.48833 * 261.57184 * 17 13 12 30 30 H 1.08996 * 110.48868 * 24.21752 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.5943 1.9851 -1.3948 5 1 1.3894 2.6810 0.5914 6 1 3.4815 1.4731 0.8033 7 6 2.0072 -1.2133 0.0005 8 1 3.0809 -1.2169 0.1177 9 6 1.3078 -2.4343 -0.1523 10 7 1.9583 -3.5939 -0.0074 11 6 1.3004 -4.7292 -0.1518 12 6 -0.0582 -4.6869 -0.4526 13 6 -0.8388 -5.9646 -0.6234 14 6 -0.3331 -7.0276 0.3675 15 6 0.1831 -8.2092 -0.4794 16 6 -0.5720 -8.0709 -1.8247 17 6 -0.6123 -6.5372 -2.0378 18 7 -0.6579 -3.5135 -0.5925 19 7 0.0031 -2.4191 -0.4413 20 1 -0.4850 0.8401 -0.0004 21 1 1.8079 -5.6757 -0.0383 22 1 -1.9005 -5.7783 -0.4616 23 1 0.4773 -6.6196 0.9716 24 1 -1.1494 -7.3574 1.0101 25 1 1.2587 -8.1258 -0.6352 26 1 -0.0615 -9.1574 -0.0005 27 1 -1.5806 -8.4764 -1.7451 28 1 -0.0236 -8.5585 -2.6306 29 1 -1.4373 -6.2651 -2.6961 30 1 0.3348 -6.1837 -2.4453 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259777890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:48 Heat of formation + Delta-G solvation = 42.384306 kcal Electronic energy + Delta-G solvation = -14366.975862 eV Core-core repulsion = 11968.783242 eV Total energy + Delta-G solvation = -2398.192620 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79766 -37.56656 -34.05911 -32.95484 -31.32461 -28.43824 -28.35490 -25.81196 -23.71564 -22.33186 -20.38714 -19.47801 -18.07414 -16.90427 -15.61195 -15.10089 -14.96984 -14.37054 -13.82242 -13.23344 -13.14106 -12.72770 -11.62425 -11.42445 -11.40853 -11.10863 -11.06400 -10.86252 -10.77535 -10.48217 -10.42143 -10.35247 -10.10332 -9.91494 -9.54803 -9.36055 -8.22429 -7.36740 -6.79761 -4.88482 2.40346 2.53278 3.00252 3.04301 3.06712 3.80312 4.48658 4.93407 4.97312 5.02213 5.45882 5.56067 5.63399 5.71740 5.85418 5.88379 5.90611 6.01976 6.06570 6.15300 6.21116 6.30438 6.36911 6.54746 6.60054 6.72994 6.92688 7.17639 7.33661 7.97613 8.30902 8.38369 8.95133 10.04177 10.60896 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.074094 B = 0.006653 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.809972 B = 4207.713248 C = 4365.257954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.063 3.937 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.097 0.903 9 C 0.314 3.686 10 N -0.541 5.541 11 C 0.135 3.865 12 C -0.136 4.136 13 C -0.008 4.008 14 C -0.121 4.121 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.113 4.113 18 N -0.189 5.189 19 N -0.286 5.286 20 H 0.283 0.717 21 H 0.142 0.858 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -8.563 -1.073 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.165 4.165 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.425 4.425 8 H 0.115 0.885 9 C 0.077 3.923 10 N -0.265 5.265 11 C -0.047 4.047 12 C -0.284 4.284 13 C -0.029 4.029 14 C -0.160 4.160 15 C -0.161 4.161 16 C -0.162 4.162 17 C -0.151 4.151 18 N -0.044 5.044 19 N -0.146 5.146 20 H 0.095 0.905 21 H 0.159 0.841 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.688 -7.392 -1.143 7.511 hybrid contribution 0.778 -0.136 0.139 0.802 sum 0.090 -7.528 -1.004 7.595 Atomic orbital electron populations 1.69998 1.07474 1.29309 1.26247 1.26164 0.95082 1.01735 0.93501 0.86044 0.80126 0.79278 0.79739 1.18934 1.19832 1.18263 1.19334 0.95443 0.87570 1.40143 0.88546 1.21286 0.89060 0.91460 0.90511 1.69255 1.39264 0.98691 1.19256 1.23195 0.92107 0.97076 0.92279 1.22446 0.94879 0.96106 1.14973 1.20073 0.98723 0.90099 0.93961 1.22310 1.00727 0.95086 0.97848 1.22357 0.99941 0.97881 0.95890 1.22498 1.00031 0.96572 0.97070 1.22424 1.01721 0.94133 0.96825 1.73371 1.31707 0.95587 1.03733 1.74799 1.06897 1.14601 1.18299 0.90523 0.84098 0.90634 0.91388 0.92053 0.91779 0.92159 0.91798 0.92068 0.91902 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.92 11.56 55.55 0.64 -18.27 16 2 C 0.06 1.60 5.47 -17.34 -0.09 1.50 16 3 Si 0.93 18.28 29.57 -169.99 -5.03 13.25 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 7 C -0.39 -10.62 9.38 -37.63 -0.35 -10.98 16 8 H 0.10 2.49 7.86 -52.49 -0.41 2.08 16 9 C 0.31 9.05 7.40 -157.90 -1.17 7.89 16 10 N -0.54 -14.38 10.47 -12.49 -0.13 -14.51 16 11 C 0.14 3.08 9.95 -17.12 -0.17 2.91 16 12 C -0.14 -3.09 5.74 -81.93 -0.47 -3.56 16 13 C -0.01 -0.13 3.30 -90.66 -0.30 -0.43 16 14 C -0.12 -1.77 6.00 -25.61 -0.15 -1.92 16 15 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 16 C -0.12 -1.50 6.91 -24.73 -0.17 -1.67 16 17 C -0.11 -1.73 6.35 -25.07 -0.16 -1.89 16 18 N -0.19 -5.08 11.57 33.80 0.39 -4.69 16 19 N -0.29 -8.41 9.20 30.85 0.28 -8.13 16 20 H 0.28 6.73 8.29 -40.82 -0.34 6.40 16 21 H 0.14 2.65 6.88 -52.49 -0.36 2.29 16 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.07 1.05 6.04 -51.93 -0.31 0.74 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 LS Contribution 254.92 15.07 3.84 3.84 Total: -1.00 -30.62 254.92 -6.80 -37.42 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.59 Total: 0.90 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.21 Total: -9.81 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 1.19 Total: -45.60 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.62 -6.80 -37.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.801 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds