Wall clock time and date at job start Mon Mar 30 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86798 * 120.00348 * 2 1 4 4 H 1.48504 * 109.46643 * 264.99007 * 3 2 1 5 5 H 1.48504 * 109.47269 * 24.98460 * 3 2 1 6 6 H 1.48496 * 109.47638 * 144.98686 * 3 2 1 7 7 C 1.40095 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99604 * 187.19578 * 7 2 1 9 9 C 1.41538 * 120.00001 * 7.18920 * 7 2 1 10 10 N 1.33744 * 119.73196 * 187.18598 * 9 7 2 11 11 C 1.32007 * 119.43669 * 180.02562 * 10 9 7 12 12 C 1.39208 * 118.93994 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.28462 * 180.02562 * 12 11 10 14 14 C 1.53876 * 110.02969 * 36.32771 * 13 12 11 15 15 C 1.54269 * 106.59435 * 240.71348 * 14 13 12 16 16 C 1.54889 * 104.19997 * 336.39033 * 15 14 13 17 17 C 1.54263 * 110.03016 * 279.15921 * 13 12 11 18 18 N 1.32525 * 119.43068 * 0.27675 * 12 11 10 19 19 N 1.28745 * 120.52495 * 359.41052 * 18 12 11 20 20 H 0.97004 * 119.99638 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.53161 * 180.02562 * 11 10 9 22 22 H 1.08997 * 110.05364 * 157.74493 * 13 12 11 23 23 H 1.08999 * 110.03509 * 359.97438 * 14 13 12 24 24 H 1.08996 * 110.03051 * 121.43712 * 14 13 12 25 25 H 1.09003 * 110.48549 * 95.07413 * 15 14 13 26 26 H 1.09001 * 110.48389 * 217.71163 * 15 14 13 27 27 H 1.08998 * 110.76060 * 279.63037 * 16 15 14 28 28 H 1.08999 * 110.91403 * 156.32336 * 16 15 14 29 29 H 1.08996 * 110.48833 * 261.57184 * 17 13 12 30 30 H 1.08996 * 110.48868 * 24.21752 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.5943 1.9851 -1.3948 5 1 1.3894 2.6810 0.5914 6 1 3.4815 1.4731 0.8033 7 6 2.0072 -1.2133 0.0005 8 1 3.0809 -1.2169 0.1177 9 6 1.3078 -2.4343 -0.1523 10 7 1.9583 -3.5939 -0.0074 11 6 1.3004 -4.7292 -0.1518 12 6 -0.0582 -4.6869 -0.4526 13 6 -0.8388 -5.9646 -0.6234 14 6 -0.3331 -7.0276 0.3675 15 6 0.1831 -8.2092 -0.4794 16 6 -0.5720 -8.0709 -1.8247 17 6 -0.6123 -6.5372 -2.0378 18 7 -0.6579 -3.5135 -0.5925 19 7 0.0031 -2.4191 -0.4413 20 1 -0.4850 0.8401 -0.0004 21 1 1.8079 -5.6757 -0.0383 22 1 -1.9005 -5.7783 -0.4616 23 1 0.4773 -6.6196 0.9716 24 1 -1.1494 -7.3574 1.0101 25 1 1.2587 -8.1258 -0.6352 26 1 -0.0615 -9.1574 -0.0005 27 1 -1.5806 -8.4764 -1.7451 28 1 -0.0236 -8.5585 -2.6306 29 1 -1.4373 -6.2651 -2.6961 30 1 0.3348 -6.1837 -2.4453 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259777890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:48 Heat of formation + Delta-G solvation = 22.598227 kcal Electronic energy + Delta-G solvation = -14367.833851 eV Core-core repulsion = 11968.783242 eV Total energy + Delta-G solvation = -2399.050609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71075 -38.88828 -35.96208 -34.96640 -33.06733 -30.03398 -29.55470 -27.58064 -25.66761 -24.16942 -21.42439 -20.91565 -19.98506 -18.82047 -17.30341 -16.68936 -16.18293 -16.04175 -15.72218 -14.74666 -14.58221 -14.06828 -13.30620 -13.21948 -13.00518 -12.84290 -12.40396 -12.25187 -12.00682 -11.97335 -11.84856 -11.82879 -11.61658 -11.43747 -11.30826 -11.13677 -10.14740 -9.37795 -8.68193 -6.92866 0.47452 0.56821 1.37844 1.49916 1.55905 2.15487 2.60867 3.54460 3.60951 3.67645 3.78949 3.93743 3.99922 4.20745 4.51320 4.59831 4.63664 4.72275 4.78870 4.93054 4.99979 5.05854 5.17153 5.23625 5.25886 5.40739 5.47743 5.57406 5.59272 5.94021 6.30739 6.43628 6.94011 8.20332 8.59276 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.074094 B = 0.006653 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.809972 B = 4207.713248 C = 4365.257954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.019 3.981 3 Si 1.011 2.989 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.250 1.250 7 C -0.421 4.421 8 H 0.101 0.899 9 C 0.284 3.716 10 N -0.559 5.559 11 C 0.138 3.862 12 C -0.118 4.118 13 C -0.012 4.012 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.113 4.113 17 C -0.112 4.112 18 N -0.227 5.227 19 N -0.333 5.333 20 H 0.292 0.708 21 H 0.186 0.814 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 -10.092 -1.073 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.204 4.204 3 Si 0.828 3.172 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.173 1.173 7 C -0.458 4.458 8 H 0.119 0.881 9 C 0.045 3.955 10 N -0.282 5.282 11 C -0.044 4.044 12 C -0.270 4.270 13 C -0.033 4.033 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.151 4.151 18 N -0.078 5.078 19 N -0.191 5.191 20 H 0.104 0.896 21 H 0.203 0.797 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.062 -8.922 -1.149 8.996 hybrid contribution 0.519 0.120 0.135 0.549 sum 0.457 -8.802 -1.014 8.872 Atomic orbital electron populations 1.70086 1.09459 1.30956 1.26862 1.27268 0.95867 1.05289 0.92024 0.84811 0.78684 0.73665 0.80053 1.18257 1.18438 1.17327 1.19745 0.95880 0.88514 1.41658 0.88121 1.21724 0.89453 0.92751 0.91528 1.69281 1.39827 0.99284 1.19850 1.23945 0.92425 0.97669 0.90372 1.23324 0.95540 0.96813 1.11311 1.20311 0.97689 0.88577 0.96743 1.22298 1.00952 0.94970 0.97454 1.22363 1.00079 0.97740 0.95266 1.22474 1.01379 0.93476 0.97751 1.22393 1.00778 0.96952 0.94963 1.73260 1.32595 0.96662 1.05319 1.74728 1.07451 1.15975 1.20932 0.89649 0.79700 0.91263 0.92426 0.90513 0.91363 0.89490 0.90263 0.90244 0.92072 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.48 11.56 21.85 0.25 -41.22 16 2 C 0.02 1.00 5.47 85.31 0.47 1.46 16 3 Si 1.01 37.61 29.57 68.60 2.03 39.64 16 4 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 7 C -0.42 -23.80 9.38 23.53 0.22 -23.58 16 8 H 0.10 5.35 7.86 -2.91 -0.02 5.32 16 9 C 0.28 16.95 7.40 134.99 1.00 17.95 16 10 N -0.56 -30.18 10.47 -193.44 -2.03 -32.21 16 11 C 0.14 6.25 9.95 84.90 0.84 7.09 16 12 C -0.12 -5.41 5.74 42.69 0.24 -5.17 16 13 C -0.01 -0.41 3.30 -10.82 -0.04 -0.45 16 14 C -0.12 -3.10 6.00 31.32 0.19 -2.91 16 15 C -0.12 -2.32 6.83 31.67 0.22 -2.10 16 16 C -0.11 -2.29 6.91 31.89 0.22 -2.07 16 17 C -0.11 -3.25 6.35 31.67 0.20 -3.05 16 18 N -0.23 -12.62 11.57 -46.97 -0.54 -13.17 16 19 N -0.33 -20.47 9.20 -56.32 -0.52 -20.99 16 20 H 0.29 14.29 8.29 -92.71 -0.77 13.52 16 21 H 0.19 6.53 6.88 -2.91 -0.02 6.51 16 22 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 23 H 0.06 1.63 6.04 -2.39 -0.01 1.62 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.52 7.85 -2.39 -0.02 1.50 16 Total: -1.00 -69.96 254.92 3.90 -66.07 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.14 Total: 14.72 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 3.57 Total: -12.83 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -2.83 Total: -107.59 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -69.96 3.90 -66.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.664 kcal (2) G-P(sol) polarization free energy of solvation -69.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds