Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86808 * 120.00134 * 2 1 4 4 H 1.48502 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47126 * 300.00185 * 3 2 1 6 6 H 1.48503 * 109.46887 * 60.00165 * 3 2 1 7 7 C 1.38813 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00451 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.46747 * 126.83643 * 0.03342 * 9 7 2 11 11 C 1.50799 * 107.59344 * 179.97438 * 10 9 7 12 12 C 1.40128 * 142.77693 * 180.02562 * 11 10 9 13 13 N 1.30769 * 108.20234 * 179.97438 * 12 11 10 14 14 N 1.40590 * 108.18843 * 0.13404 * 13 12 11 15 15 C 1.46499 * 126.12389 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.50109 * 8.48797 * 15 14 13 17 17 C 1.52994 * 117.50021 * 299.82637 * 15 14 13 18 18 C 1.35186 * 107.82368 * 359.81358 * 14 13 12 19 19 C 1.46748 * 126.84158 * 180.02562 * 9 7 2 20 20 H 0.97006 * 120.00018 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.84431 * 299.46105 * 10 9 7 22 22 H 1.09003 * 109.84569 * 60.37623 * 10 9 7 23 23 H 1.08001 * 125.90013 * 359.97438 * 12 11 10 24 24 H 1.09000 * 115.54821 * 154.15562 * 15 14 13 25 25 H 1.09006 * 117.49757 * 359.97438 * 16 15 14 26 26 H 1.08998 * 117.50233 * 145.01842 * 16 15 14 27 27 H 1.09007 * 117.50308 * 214.98066 * 17 15 14 28 28 H 1.09003 * 117.49988 * 0.02562 * 17 15 14 29 29 H 1.09003 * 109.84571 * 299.50659 * 19 9 7 30 30 H 1.08996 * 109.84427 * 60.53916 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1315 -2.5627 -0.0007 11 6 -0.4129 -4.0442 -0.0013 12 6 -1.4539 -4.9823 -0.0021 13 7 -0.9258 -6.1786 -0.0027 14 7 0.4733 -6.0406 0.0008 15 6 1.4489 -7.1335 0.0008 16 6 0.9185 -8.5540 -0.2036 17 6 1.4131 -8.1124 1.1761 18 6 0.7588 -4.7193 -0.0007 19 6 1.9027 -3.7373 -0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 -0.5590 -2.1061 0.8919 22 1 -0.5591 -2.1037 -0.8921 23 1 -2.5100 -4.7563 -0.0021 24 1 2.4232 -6.8940 -0.4251 25 1 -0.1564 -8.6755 -0.3377 26 1 1.5440 -9.2491 -0.7636 27 1 2.3638 -8.5172 1.5232 28 1 0.6634 -7.9436 1.9491 29 1 2.5125 -3.8789 -0.8928 30 1 2.5118 -3.8791 0.8921 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259780204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = 155.126706 kcal Electronic energy + Delta-G solvation = -14412.494501 eV Core-core repulsion = 12019.190758 eV Total energy + Delta-G solvation = -2393.303743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.92700 -37.23316 -35.85040 -32.10909 -30.87947 -28.88892 -26.64107 -24.91535 -23.03332 -22.51337 -21.19594 -19.24948 -19.09502 -16.93417 -16.21939 -15.23660 -14.85882 -14.49970 -14.07459 -13.35758 -13.09176 -12.81799 -12.66268 -11.65211 -11.57849 -11.31476 -11.07240 -10.95738 -10.89989 -10.75766 -10.43966 -10.21213 -9.99561 -9.77300 -8.94436 -8.61995 -7.61673 -6.78543 -5.77902 -3.12947 2.25152 2.63268 3.39014 3.40049 3.43711 3.46857 3.73360 4.41313 4.48796 4.71588 4.81636 4.93843 5.34777 5.45523 5.49694 5.52843 5.62511 5.85186 5.93037 6.03479 6.24038 6.44077 6.44666 6.86523 7.23120 7.46700 7.53176 7.59469 7.79542 8.10810 8.22335 9.13652 9.72427 10.40576 11.35472 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.059746 B = 0.006996 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.535002 B = 4001.305952 C = 4381.498706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.918 3.082 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.229 4.229 8 H 0.085 0.915 9 N -0.596 5.596 10 C 0.245 3.755 11 C -0.257 4.257 12 C 0.071 3.929 13 N -0.303 5.303 14 N -0.337 5.337 15 C 0.087 3.913 16 C -0.167 4.167 17 C -0.182 4.182 18 C 0.045 3.955 19 C 0.218 3.782 20 H 0.255 0.745 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.181 0.819 24 H 0.140 0.860 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.038 0.962 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -12.619 0.293 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.748 3.252 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.103 0.897 9 N -0.323 5.323 10 C 0.119 3.881 11 C -0.268 4.268 12 C -0.114 4.114 13 N -0.124 5.124 14 N -0.118 5.118 15 C -0.017 4.017 16 C -0.205 4.205 17 C -0.220 4.220 18 C -0.082 4.082 19 C 0.090 3.910 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.198 0.802 24 H 0.157 0.843 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.762 -13.712 0.288 13.827 hybrid contribution 0.475 1.601 0.012 1.670 sum 2.237 -12.110 0.300 12.319 Atomic orbital electron populations 1.69969 1.04966 1.25351 1.56068 1.24847 0.95792 0.97789 1.01686 0.85961 0.78663 0.83279 0.77315 1.20367 1.21586 1.21594 1.18983 0.90444 0.81146 1.45015 0.89747 1.44038 1.01563 0.98987 1.87759 1.19032 0.84439 0.83337 1.01262 1.21981 0.91924 0.99742 1.13200 1.23191 0.99576 0.88695 0.99966 1.77369 0.85756 1.22074 1.27191 1.47313 1.03737 1.02141 1.58656 1.21713 0.92029 0.83073 1.04861 1.23262 1.03154 0.94815 0.99245 1.23447 1.03669 1.02437 0.92464 1.21802 1.00690 0.84084 1.01644 1.19117 0.89496 0.83482 0.98909 0.93489 0.92766 0.92714 0.80177 0.84294 0.87251 0.87764 0.87662 0.88187 0.94441 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.49 55.49 0.58 -26.21 16 2 C 0.00 -0.11 5.49 -17.44 -0.10 -0.21 16 3 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.33 10.34 -15.06 -0.16 -6.48 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.67 3.42 -175.49 -0.60 -16.27 16 10 C 0.24 6.28 5.41 -5.01 -0.03 6.25 16 11 C -0.26 -5.68 6.99 -104.94 -0.73 -6.41 16 12 C 0.07 1.36 12.03 -17.30 -0.21 1.15 16 13 N -0.30 -5.71 12.02 30.67 0.37 -5.34 16 14 N -0.34 -6.16 3.96 -50.64 -0.20 -6.36 16 15 C 0.09 1.20 6.90 -67.93 -0.47 0.73 16 16 C -0.17 -1.86 10.19 -26.70 -0.27 -2.14 16 17 C -0.18 -2.06 10.46 -26.70 -0.28 -2.34 16 18 C 0.04 0.93 7.67 -82.16 -0.63 0.30 16 19 C 0.22 4.75 7.28 -5.03 -0.04 4.72 16 20 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 21 H 0.05 1.51 7.51 -51.93 -0.39 1.12 16 22 H 0.05 1.52 7.51 -51.93 -0.39 1.14 16 23 H 0.18 2.79 8.06 -52.49 -0.42 2.37 16 24 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 25 H 0.11 1.38 7.83 -51.93 -0.41 0.98 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 259.42 15.07 3.91 3.91 Total: -1.00 -31.38 259.42 -7.56 -38.95 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.69 Total: -0.91 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.91 Total: -4.44 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.15 Total: -54.19 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.38 -7.56 -38.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.073 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds