Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86808 * 120.00134 * 2 1 4 4 H 1.48502 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47126 * 300.00185 * 3 2 1 6 6 H 1.48503 * 109.46887 * 60.00165 * 3 2 1 7 7 C 1.38813 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00451 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.46747 * 126.83643 * 0.03342 * 9 7 2 11 11 C 1.50799 * 107.59344 * 179.97438 * 10 9 7 12 12 C 1.40128 * 142.77693 * 180.02562 * 11 10 9 13 13 N 1.30769 * 108.20234 * 179.97438 * 12 11 10 14 14 N 1.40590 * 108.18843 * 0.13404 * 13 12 11 15 15 C 1.46499 * 126.12389 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.50109 * 8.48797 * 15 14 13 17 17 C 1.52994 * 117.50021 * 299.82637 * 15 14 13 18 18 C 1.35186 * 107.82368 * 359.81358 * 14 13 12 19 19 C 1.46748 * 126.84158 * 180.02562 * 9 7 2 20 20 H 0.97006 * 120.00018 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.84431 * 299.46105 * 10 9 7 22 22 H 1.09003 * 109.84569 * 60.37623 * 10 9 7 23 23 H 1.08001 * 125.90013 * 359.97438 * 12 11 10 24 24 H 1.09000 * 115.54821 * 154.15562 * 15 14 13 25 25 H 1.09006 * 117.49757 * 359.97438 * 16 15 14 26 26 H 1.08998 * 117.50233 * 145.01842 * 16 15 14 27 27 H 1.09007 * 117.50308 * 214.98066 * 17 15 14 28 28 H 1.09003 * 117.49988 * 0.02562 * 17 15 14 29 29 H 1.09003 * 109.84571 * 299.50659 * 19 9 7 30 30 H 1.08996 * 109.84427 * 60.53916 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1315 -2.5627 -0.0007 11 6 -0.4129 -4.0442 -0.0013 12 6 -1.4539 -4.9823 -0.0021 13 7 -0.9258 -6.1786 -0.0027 14 7 0.4733 -6.0406 0.0008 15 6 1.4489 -7.1335 0.0008 16 6 0.9185 -8.5540 -0.2036 17 6 1.4131 -8.1124 1.1761 18 6 0.7588 -4.7193 -0.0007 19 6 1.9027 -3.7373 -0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 -0.5590 -2.1061 0.8919 22 1 -0.5591 -2.1037 -0.8921 23 1 -2.5100 -4.7563 -0.0021 24 1 2.4232 -6.8940 -0.4251 25 1 -0.1564 -8.6755 -0.3377 26 1 1.5440 -9.2491 -0.7636 27 1 2.3638 -8.5172 1.5232 28 1 0.6634 -7.9436 1.9491 29 1 2.5125 -3.8789 -0.8928 30 1 2.5118 -3.8791 0.8921 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259780204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = 135.513855 kcal Electronic energy + Delta-G solvation = -14413.344978 eV Core-core repulsion = 12019.190758 eV Total energy + Delta-G solvation = -2394.154220 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.47874 -38.52358 -37.44633 -34.11344 -32.34335 -30.77144 -28.44244 -26.85407 -24.28797 -23.41092 -23.08793 -20.86528 -20.46278 -18.84078 -17.72370 -16.82680 -16.65454 -15.81539 -15.49471 -15.17522 -14.74972 -14.60009 -13.84137 -13.46727 -13.21582 -12.81127 -12.76877 -12.60162 -12.48559 -12.07506 -12.01031 -11.84424 -11.69304 -11.47307 -10.94916 -10.08800 -9.35829 -8.77459 -7.88846 -5.28032 0.73744 1.25870 1.50814 1.52587 1.63191 1.76942 2.47358 2.75754 3.33679 3.33836 3.37715 3.54856 3.79654 3.92754 4.12564 4.19203 4.56633 4.65371 4.69098 4.72536 4.83332 4.99565 5.17003 5.19914 5.40531 5.41526 5.68074 5.70801 6.08140 6.10356 6.63854 7.02332 7.65912 8.34590 9.24447 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.059746 B = 0.006996 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.535002 B = 4001.305952 C = 4381.498706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.063 4.063 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.098 0.902 9 N -0.619 5.619 10 C 0.263 3.737 11 C -0.292 4.292 12 C 0.073 3.927 13 N -0.302 5.302 14 N -0.327 5.327 15 C 0.047 3.953 16 C -0.149 4.149 17 C -0.167 4.167 18 C 0.049 3.951 19 C 0.218 3.782 20 H 0.251 0.749 21 H 0.017 0.983 22 H 0.018 0.982 23 H 0.210 0.790 24 H 0.161 0.839 25 H 0.093 0.907 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 -14.437 0.274 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.817 3.183 4 H -0.183 1.183 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.116 0.884 9 N -0.346 5.346 10 C 0.137 3.863 11 C -0.303 4.303 12 C -0.112 4.112 13 N -0.123 5.123 14 N -0.109 5.109 15 C -0.055 4.055 16 C -0.187 4.187 17 C -0.205 4.205 18 C -0.080 4.080 19 C 0.091 3.909 20 H 0.060 0.940 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.226 0.774 24 H 0.179 0.821 25 H 0.111 0.889 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.495 -15.595 0.271 15.984 hybrid contribution -0.027 2.034 0.027 2.034 sum 3.468 -13.561 0.299 14.001 Atomic orbital electron populations 1.70195 1.06659 1.25800 1.57280 1.25802 0.96681 1.01421 1.01745 0.84853 0.78291 0.78465 0.76698 1.18337 1.21798 1.21827 1.19463 0.91296 0.82009 1.44371 0.88426 1.44313 1.01988 1.00543 1.87799 1.18520 0.84344 0.85570 0.97855 1.21766 0.94020 0.98039 1.16525 1.23584 1.00569 0.87828 0.99240 1.77350 0.86322 1.21687 1.26906 1.47685 1.04127 1.02214 1.56838 1.22381 0.92210 0.82967 1.07982 1.23367 1.02829 0.93155 0.99331 1.23519 1.04731 1.00518 0.91732 1.21649 0.99691 0.85343 1.01319 1.19186 0.89848 0.81726 1.00120 0.94008 0.96495 0.96407 0.77377 0.82134 0.88867 0.84282 0.84358 0.89998 0.92651 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.80 10.49 21.65 0.23 -57.57 16 2 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 3 Si 0.99 45.02 29.55 68.60 2.03 47.05 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.24 -13.61 10.34 84.03 0.87 -12.74 16 8 H 0.10 5.03 7.83 -2.91 -0.02 5.01 16 9 N -0.62 -33.16 3.42 -709.12 -2.42 -35.58 16 10 C 0.26 14.17 5.41 85.62 0.46 14.63 16 11 C -0.29 -13.12 6.99 -20.07 -0.14 -13.26 16 12 C 0.07 2.75 12.03 85.31 1.03 3.77 16 13 N -0.30 -10.98 12.02 -56.89 -0.68 -11.66 16 14 N -0.33 -11.44 3.96 -314.14 -1.24 -12.68 16 15 C 0.05 1.14 6.90 44.99 0.31 1.45 16 16 C -0.15 -2.79 10.19 30.62 0.31 -2.48 16 17 C -0.17 -3.20 10.46 30.62 0.32 -2.88 16 18 C 0.05 2.00 7.67 41.37 0.32 2.32 16 19 C 0.22 9.35 7.28 85.60 0.62 9.98 16 20 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 21 H 0.02 1.01 7.51 -2.39 -0.02 0.99 16 22 H 0.02 1.06 7.51 -2.39 -0.02 1.05 16 23 H 0.21 6.31 8.06 -2.91 -0.02 6.29 16 24 H 0.16 3.16 8.14 -2.39 -0.02 3.14 16 25 H 0.09 2.11 7.83 -2.38 -0.02 2.09 16 26 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.14 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -69.56 259.42 3.60 -65.96 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.13 Total: 6.82 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 4.57 Total: -2.33 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.13 Total: -117.50 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.56 3.60 -65.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.472 kcal (2) G-P(sol) polarization free energy of solvation -69.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds