Wall clock time and date at job start Mon Mar 30 2020 03:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32262 * 120.44374 * 2 1 4 4 C 1.33419 * 120.60166 * 179.88565 * 3 2 1 5 5 C 1.41578 * 119.07930 * 180.29608 * 4 3 2 6 6 H 1.07999 * 120.00121 * 179.97438 * 5 4 3 7 7 C 1.40063 * 119.99980 * 359.97395 * 5 4 3 8 8 N 1.30693 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99736 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46817 * 90.00641 * 9 7 5 11 11 H 1.48502 * 109.46912 * 210.00004 * 9 7 5 12 12 H 1.48499 * 109.47408 * 330.00319 * 9 7 5 13 13 N 1.33345 * 121.84092 * 0.27016 * 4 3 2 14 14 C 1.32909 * 120.64821 * 359.93939 * 13 4 3 15 15 C 1.38101 * 120.43421 * 179.97438 * 2 1 3 16 16 C 1.51619 * 132.61521 * 359.07030 * 15 2 1 17 17 C 1.54676 * 102.53271 * 196.15081 * 16 15 2 18 18 N 1.38674 * 130.75400 * 179.64664 * 14 13 4 19 19 C 1.46901 * 110.99689 * 283.61633 * 18 14 13 20 20 H 1.09007 * 109.46807 * 89.99677 * 1 2 3 21 21 H 1.08995 * 109.47134 * 210.00135 * 1 2 3 22 22 H 1.09002 * 109.46513 * 330.00087 * 1 2 3 23 23 H 0.97001 * 119.99648 * 179.97438 * 8 7 5 24 24 H 1.09004 * 110.72697 * 77.94775 * 16 15 2 25 25 H 1.09005 * 110.94282 * 314.45341 * 16 15 2 26 26 H 1.09002 * 110.75645 * 216.46757 * 17 16 15 27 27 H 1.09002 * 110.75265 * 93.28807 * 17 16 15 28 28 H 1.09003 * 109.47476 * 299.71516 * 19 18 14 29 29 H 1.08993 * 109.47205 * 59.72199 * 19 18 14 30 30 H 1.09003 * 109.46605 * 179.71918 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1772 1.1403 0.0000 4 6 3.5114 1.1439 0.0023 5 6 4.1960 2.3831 0.0086 6 1 5.2758 2.4035 0.0110 7 6 3.4730 3.5827 0.0118 8 7 2.1663 3.5581 0.0095 9 14 4.3764 5.2177 0.0194 10 1 4.6181 5.6562 -1.3787 11 1 3.5533 6.2347 0.7218 12 1 5.6759 5.0620 0.7210 13 7 4.2180 0.0131 -0.0007 14 6 3.6073 -1.1674 -0.0049 15 6 2.2066 -1.1907 0.0005 16 6 1.7647 -2.6410 0.0193 17 6 3.0599 -3.3813 0.4276 18 7 4.1244 -2.4541 -0.0150 19 6 4.6140 -2.8141 -1.3524 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 1.6656 4.3889 0.0121 24 1 1.4347 -2.9565 -0.9705 25 1 0.9793 -2.7994 0.7584 26 1 3.1391 -4.3363 -0.0918 27 1 3.0979 -3.5262 1.5073 28 1 3.7910 -2.7670 -2.0656 29 1 5.3957 -2.1166 -1.6531 30 1 5.0186 -3.8260 -1.3308 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:58 Heat of formation + Delta-G solvation = 39.888555 kcal Electronic energy + Delta-G solvation = -14722.071416 eV Core-core repulsion = 12323.770572 eV Total energy + Delta-G solvation = -2398.300844 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.77700 -38.85035 -35.61264 -34.64332 -32.16311 -31.04888 -29.21843 -27.47983 -26.86985 -23.56422 -22.98759 -21.16450 -19.42122 -18.24537 -17.14198 -16.77878 -16.30223 -15.45114 -15.00818 -14.86749 -14.41182 -13.94994 -13.76744 -13.53337 -13.35941 -13.13606 -13.00074 -12.89586 -12.74050 -12.58268 -12.06809 -11.95539 -11.30124 -10.91694 -10.77905 -10.03615 -9.37121 -8.96336 -8.43905 -6.74009 0.68443 0.93676 1.38573 1.49179 1.54925 2.19234 2.61408 2.72125 3.77576 3.91358 3.93612 4.09891 4.14473 4.33207 4.39375 4.54413 4.63879 4.74790 4.82185 4.85648 4.90425 4.95568 5.08588 5.16037 5.19418 5.42201 5.70524 5.92804 6.10815 6.17230 6.63356 6.66248 7.18825 8.23784 8.38085 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.040468 B = 0.009333 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.742234 B = 2999.231264 C = 3574.876311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.175 3.825 3 N -0.544 5.544 4 C 0.379 3.621 5 C -0.440 4.440 6 H 0.084 0.916 7 C 0.025 3.975 8 N -0.744 5.744 9 Si 1.001 2.999 10 H -0.259 1.259 11 H -0.259 1.259 12 H -0.259 1.259 13 N -0.627 5.627 14 C 0.337 3.663 15 C -0.392 4.392 16 C -0.065 4.065 17 C 0.057 3.943 18 N -0.505 5.505 19 C 0.042 3.958 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.060 0.940 23 H 0.284 0.716 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 -8.180 -1.320 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.024 3.976 3 N -0.263 5.263 4 C 0.139 3.861 5 C -0.476 4.476 6 H 0.102 0.898 7 C -0.198 4.198 8 N -0.367 5.367 9 Si 0.819 3.181 10 H -0.183 1.183 11 H -0.183 1.183 12 H -0.183 1.183 13 N -0.351 5.351 14 C 0.092 3.908 15 C -0.404 4.404 16 C -0.104 4.104 17 C -0.070 4.070 18 N -0.226 5.226 19 C -0.104 4.104 20 H 0.096 0.904 21 H 0.109 0.891 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.140 0.860 27 H 0.105 0.895 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.037 -7.177 -0.993 7.526 hybrid contribution -0.515 0.143 -0.419 0.679 sum -2.552 -7.034 -1.411 7.615 Atomic orbital electron populations 1.20530 0.87718 1.02780 1.02679 1.21671 0.98290 0.87929 0.89675 1.69440 1.08443 1.26435 1.21981 1.20219 0.86214 0.90720 0.88901 1.19609 0.94717 0.88671 1.44581 0.89759 1.27033 0.95781 1.04608 0.92409 1.70213 1.08149 1.30268 1.28024 0.84952 0.78798 0.74607 0.79734 1.18325 1.18320 1.18273 1.67985 1.42340 0.97545 1.27221 1.20580 0.90014 0.90110 0.90102 1.22211 0.96201 0.97820 1.24173 1.21185 0.98658 0.88551 1.01984 1.23328 0.86416 0.95134 1.02074 1.59297 1.37229 0.98714 1.27334 1.22362 0.99093 1.02897 0.86034 0.90403 0.89133 0.92118 0.90497 0.90614 0.89276 0.86029 0.89524 0.95206 0.93277 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.01 10.13 71.24 0.72 -2.29 16 2 C 0.18 8.73 6.81 42.46 0.29 9.02 16 3 N -0.54 -31.94 7.81 -182.62 -1.43 -33.37 16 4 C 0.38 23.30 7.36 135.19 0.99 24.30 16 5 C -0.44 -26.06 9.37 23.54 0.22 -25.84 16 6 H 0.08 4.87 7.85 -2.91 -0.02 4.85 16 7 C 0.03 1.32 5.50 85.30 0.47 1.79 16 8 N -0.74 -40.63 11.41 21.84 0.25 -40.38 16 9 Si 1.00 39.28 29.56 68.60 2.03 41.30 16 10 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 11 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 12 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 13 N -0.63 -36.88 10.39 -191.23 -1.99 -38.87 16 14 C 0.34 16.80 6.77 133.26 0.90 17.70 16 15 C -0.39 -17.88 6.12 -19.15 -0.12 -18.00 16 16 C -0.06 -2.03 6.64 30.71 0.20 -1.83 16 17 C 0.06 1.62 6.98 86.67 0.61 2.23 16 18 N -0.51 -19.66 5.28 -719.60 -3.80 -23.46 16 19 C 0.04 1.36 9.28 127.69 1.19 2.55 16 20 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 21 H 0.09 2.75 7.68 -2.39 -0.02 2.74 16 22 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.28 13.75 8.29 -92.71 -0.77 12.98 16 24 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.09 2.41 7.97 -2.38 -0.02 2.39 16 26 H 0.12 2.40 7.76 -2.39 -0.02 2.38 16 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.11 2.57 8.11 -2.39 -0.02 2.55 16 Total: -1.00 -73.75 257.25 1.67 -72.08 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.14 Total: 13.06 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.47 Total: 9.63 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -6.97 Total: -136.08 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.30 kcal Total: -73.75 1.67 -72.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.965 kcal (2) G-P(sol) polarization free energy of solvation -73.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds