Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.57441 * 2 1 4 4 C 1.53534 * 109.57531 * 239.61914 * 2 1 3 5 5 N 1.47290 * 107.58406 * 181.84432 * 4 2 1 6 6 C 1.40323 * 117.68150 * 42.04192 * 5 4 2 7 7 C 1.37838 * 119.97458 * 166.35452 * 6 5 4 8 8 C 1.40804 * 119.55592 * 179.72470 * 7 6 5 9 9 C 1.41203 * 120.21821 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99754 * 25.81083 * 9 8 7 11 11 C 1.39858 * 120.00283 * 205.81069 * 9 8 7 12 12 N 1.30896 * 119.99971 * 200.03666 * 11 9 8 13 13 Si 1.86795 * 120.00165 * 20.04229 * 11 9 8 14 14 H 1.48508 * 109.46788 * 264.69864 * 13 11 9 15 15 H 1.48497 * 109.47349 * 144.69826 * 13 11 9 16 16 H 1.48504 * 109.47405 * 24.69546 * 13 11 9 17 17 C 1.40871 * 119.56795 * 0.22053 * 8 7 6 18 18 C 1.36408 * 120.18024 * 359.54542 * 17 8 7 19 19 C 1.39312 * 120.49432 * 0.54599 * 18 17 8 20 20 O 1.35761 * 119.47482 * 179.47946 * 19 18 17 21 21 H 1.08999 * 109.46766 * 299.74309 * 1 2 3 22 22 H 1.09001 * 109.47058 * 59.74544 * 1 2 3 23 23 H 1.09002 * 109.46365 * 179.74384 * 1 2 3 24 24 H 1.08993 * 109.83177 * 301.35790 * 4 2 1 25 25 H 1.08999 * 109.83781 * 62.25201 * 4 2 1 26 26 H 0.96998 * 121.15613 * 222.06359 * 5 4 2 27 27 H 1.08000 * 120.21918 * 359.70057 * 7 6 5 28 28 H 0.97000 * 120.00063 * 5.12679 * 12 11 9 29 29 H 1.08001 * 119.90642 * 179.81750 * 17 8 7 30 30 H 1.08002 * 119.75347 * 180.25908 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0444 -0.7316 -1.2480 5 7 3.5157 -0.7448 -1.1812 6 6 4.1095 -1.0141 0.0614 7 6 5.4524 -1.3164 0.1319 8 6 6.0404 -1.5794 1.3840 9 6 7.4147 -1.8911 1.4723 10 1 8.0978 -1.5410 0.7125 11 6 7.8915 -2.6532 2.5437 12 7 9.1625 -2.6214 2.8551 13 14 6.7146 -3.7166 3.5304 14 1 6.2621 -2.9703 4.7319 15 1 7.4067 -4.9609 3.9521 16 1 5.5394 -4.0638 2.6916 17 6 5.2475 -1.5346 2.5475 18 6 3.9208 -1.2292 2.4618 19 6 3.3334 -0.9699 1.2255 20 8 2.0089 -0.6785 1.1631 21 1 -0.3633 0.5098 0.8923 22 1 -0.3633 0.5178 -0.8877 23 1 -0.3632 -1.0277 -0.0046 24 1 1.6656 -1.7535 -1.2599 25 1 1.7186 -0.2060 -2.1455 26 1 4.0554 -0.5731 -1.9686 27 1 6.0496 -1.3518 -0.7673 28 1 9.7603 -2.0140 2.3918 29 1 5.6922 -1.7382 3.5104 30 1 3.3202 -1.1926 3.3587 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865372.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = -21.820495 kcal Electronic energy + Delta-G solvation = -14566.913071 eV Core-core repulsion = 12133.643570 eV Total energy + Delta-G solvation = -2433.269500 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61311 -36.76091 -34.58435 -33.57714 -31.76205 -29.53374 -28.35685 -25.03024 -24.40205 -22.34526 -20.84596 -19.71879 -18.10112 -17.22518 -16.20772 -15.41029 -14.74765 -14.39479 -13.76344 -13.52237 -13.30470 -12.85671 -12.77518 -12.31139 -12.20374 -11.96310 -11.61907 -11.09750 -10.93040 -10.76132 -10.22191 -9.88486 -9.68238 -9.33101 -9.11665 -8.85206 -7.41222 -7.22345 -6.50904 -4.41900 2.68691 2.81860 3.28295 3.42931 3.64210 3.90951 4.10932 4.13655 4.58764 4.93607 5.20765 5.32002 5.46710 5.47673 5.70147 5.77357 5.94025 6.04247 6.20478 6.45471 6.60098 6.67072 6.98563 7.29871 7.40480 7.58441 7.61771 7.82264 8.03662 8.27109 8.39146 8.51342 8.74910 8.86314 10.06000 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.052882 B = 0.008402 C = 0.007609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.349170 B = 3331.568608 C = 3679.064554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.059 0.941 4 C 0.099 3.901 5 N -0.767 5.767 6 C 0.177 3.823 7 C -0.257 4.257 8 C 0.111 3.889 9 C -0.514 4.514 10 H 0.075 0.925 11 C 0.044 3.956 12 N -0.818 5.818 13 Si 1.073 2.927 14 H -0.278 1.278 15 H -0.292 1.292 16 H -0.260 1.260 17 C -0.251 4.251 18 C -0.058 4.058 19 C -0.073 4.073 20 O -0.321 6.321 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.396 0.604 27 H 0.099 0.901 28 H 0.285 0.715 29 H 0.107 0.893 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.756 2.969 -5.016 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.077 0.923 4 C -0.027 4.027 5 N -0.403 5.403 6 C 0.079 3.921 7 C -0.281 4.281 8 C 0.107 3.893 9 C -0.542 4.542 10 H 0.093 0.907 11 C -0.175 4.175 12 N -0.440 5.440 13 Si 0.899 3.101 14 H -0.205 1.205 15 H -0.220 1.220 16 H -0.185 1.185 17 C -0.271 4.271 18 C -0.078 4.078 19 C -0.119 4.119 20 O -0.237 6.237 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.231 0.769 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.004 1.829 -3.629 12.673 hybrid contribution 0.613 1.436 -1.930 2.483 sum -11.391 3.265 -5.559 13.089 Atomic orbital electron populations 1.21712 0.92954 1.02889 1.02307 1.22446 0.94526 0.95238 0.86381 0.92337 1.22066 0.82365 1.00135 0.98115 1.44531 1.04230 1.82734 1.08805 1.17693 0.92822 0.97713 0.83878 1.20291 0.92071 1.18455 0.97297 1.17488 0.92998 0.88686 0.90144 1.20528 0.93257 1.31435 1.09022 0.90712 1.27271 0.98289 0.96898 0.95018 1.70576 1.05306 1.32180 1.35984 0.83591 0.74906 0.75225 0.76333 1.20509 1.22030 1.18487 1.20495 0.93702 1.15142 0.97746 1.19640 0.94128 1.00302 0.93689 1.17968 0.82772 1.18709 0.92481 1.85834 1.22446 1.74917 1.40502 0.91659 0.91177 0.91760 0.92443 0.90572 0.76903 0.88334 0.90365 0.87590 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.58 37.16 0.36 -1.26 16 2 C 0.07 1.14 3.58 -26.45 -0.09 1.05 16 3 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.10 1.47 6.65 -3.33 -0.02 1.45 16 5 N -0.77 -13.79 5.92 -57.63 -0.34 -14.13 16 6 C 0.18 4.00 6.49 -83.47 -0.54 3.46 16 7 C -0.26 -6.30 9.67 -38.76 -0.37 -6.67 16 8 C 0.11 2.92 5.20 -106.81 -0.56 2.36 16 9 C -0.51 -14.16 9.42 -37.85 -0.36 -14.51 16 10 H 0.07 2.12 8.06 -52.48 -0.42 1.69 16 11 C 0.04 1.20 5.40 -17.34 -0.09 1.10 16 12 N -0.82 -22.37 13.66 55.54 0.76 -21.61 16 13 Si 1.07 25.03 24.82 -169.99 -4.22 20.81 16 14 H -0.28 -6.16 6.64 56.52 0.38 -5.78 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.26 -6.11 6.84 56.52 0.39 -5.73 16 17 C -0.25 -6.30 7.13 -39.25 -0.28 -6.58 16 18 C -0.06 -1.37 9.89 -39.84 -0.39 -1.77 16 19 C -0.07 -1.69 6.55 -38.53 -0.25 -1.94 16 20 O -0.32 -6.58 9.96 -18.99 -0.19 -6.77 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.40 6.22 8.90 -40.82 -0.36 5.86 16 27 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 28 H 0.29 7.58 8.73 -40.82 -0.36 7.22 16 29 H 0.11 2.61 4.27 -52.49 -0.22 2.38 16 30 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 249.44 15.07 3.76 3.76 Total: -1.00 -29.56 249.44 -6.43 -35.99 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.59 Total: 5.27 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -2.61 Total: -23.31 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.42 Total: -35.74 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.19 Total: -6.77 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.22 Total: 20.81 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.56 -6.43 -35.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865372.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.165 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds