Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.57043 * 2 1 4 4 C 1.53518 * 109.68178 * 120.31589 * 2 1 3 5 5 N 1.47294 * 107.58457 * 178.22207 * 4 2 1 6 6 C 1.40316 * 117.67755 * 317.95931 * 5 4 2 7 7 C 1.37834 * 119.97587 * 193.64053 * 6 5 4 8 8 C 1.40809 * 119.56265 * 180.27396 * 7 6 5 9 9 C 1.41198 * 120.22027 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00160 * 154.88644 * 9 8 7 11 11 C 1.39861 * 119.99967 * 334.89222 * 9 8 7 12 12 N 1.30890 * 120.00076 * 334.07425 * 11 9 8 13 13 Si 1.86796 * 120.00013 * 154.07768 * 11 9 8 14 14 H 1.48498 * 109.47280 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47371 * 239.99919 * 13 11 9 16 16 H 1.48506 * 109.47281 * 119.99729 * 13 11 9 17 17 C 1.40871 * 119.56429 * 0.30854 * 8 7 6 18 18 C 1.36420 * 120.18063 * 359.37327 * 17 8 7 19 19 C 1.39308 * 120.48869 * 0.54313 * 18 17 8 20 20 O 1.35758 * 119.47303 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46662 * 180.25919 * 1 2 3 22 22 H 1.09004 * 109.47066 * 300.25554 * 1 2 3 23 23 H 1.08989 * 109.47343 * 60.25981 * 1 2 3 24 24 H 1.09002 * 109.84200 * 297.74614 * 4 2 1 25 25 H 1.09010 * 109.83628 * 58.63984 * 4 2 1 26 26 H 0.96994 * 121.15882 * 137.96887 * 5 4 2 27 27 H 1.08001 * 120.22158 * 0.29253 * 7 6 5 28 28 H 0.97001 * 119.99997 * 354.24644 * 12 11 9 29 29 H 1.07996 * 119.90843 * 179.62263 * 17 8 7 30 30 H 1.08005 * 119.75515 * 180.25748 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0471 -0.7296 1.2478 5 7 3.5184 -0.7402 1.1795 6 6 4.1113 -1.0092 -0.0635 7 6 5.4547 -1.3090 -0.1353 8 6 6.0419 -1.5718 -1.3878 9 6 7.4167 -1.8809 -1.4774 10 1 7.7869 -2.4598 -2.3106 11 6 8.2991 -1.4376 -0.4870 12 7 8.0144 -0.3683 0.2122 13 14 9.8840 -2.3713 -0.1622 14 1 9.9702 -3.5349 -1.0807 15 1 9.8984 -2.8480 1.2441 16 1 11.0439 -1.4729 -0.3922 17 6 5.2499 -1.5184 -2.5516 18 6 3.9202 -1.2266 -2.4636 19 6 3.3338 -0.9676 -1.2268 20 8 2.0089 -0.6788 -1.1631 21 1 -0.3633 -1.0277 0.0046 22 1 -0.3633 0.5178 0.8877 23 1 -0.3633 0.5097 -0.8922 24 1 1.7223 -0.2033 2.1454 25 1 1.6692 -1.7520 1.2617 26 1 4.0586 -0.5673 1.9663 27 1 6.0530 -1.3424 0.7633 28 1 7.2348 0.1639 -0.0111 29 1 5.6959 -1.7131 -3.5158 30 1 3.3186 -1.1916 -3.3599 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865376.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = -44.165724 kcal Electronic energy + Delta-G solvation = -14588.789679 eV Core-core repulsion = 12154.551217 eV Total energy + Delta-G solvation = -2434.238462 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19442 -38.54357 -36.06830 -35.52573 -33.10177 -30.73277 -29.82397 -26.60277 -26.29878 -23.76108 -23.00108 -21.12447 -19.65979 -18.68285 -17.83524 -16.99683 -16.25165 -15.78076 -15.53389 -15.05449 -14.78001 -14.60896 -14.29427 -13.89452 -13.30627 -13.24704 -12.99523 -12.87359 -12.61275 -12.17711 -11.97022 -11.65941 -11.51675 -11.23417 -10.82110 -10.65512 -9.23316 -9.17380 -8.17460 -6.35411 0.89522 1.01079 1.51845 1.65629 1.81310 2.35012 2.46553 2.65821 2.79530 3.55918 3.74363 4.05105 4.14180 4.18860 4.41742 4.65936 4.69260 4.81328 4.88283 4.92997 5.00901 5.22139 5.24347 5.45901 5.63769 5.75903 5.83611 6.02087 6.24946 6.41704 6.65719 6.90072 6.95987 7.09077 8.07137 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053057 B = 0.007892 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.612011 B = 3547.158451 C = 3936.784434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 H 0.052 0.948 4 C 0.097 3.903 5 N -0.764 5.764 6 C 0.171 3.829 7 C -0.275 4.275 8 C 0.080 3.920 9 C -0.556 4.556 10 H 0.071 0.929 11 C 0.004 3.996 12 N -0.819 5.819 13 Si 1.122 2.878 14 H -0.265 1.265 15 H -0.268 1.268 16 H -0.266 1.266 17 C -0.248 4.248 18 C -0.074 4.074 19 C -0.081 4.081 20 O -0.334 6.334 21 H 0.066 0.934 22 H 0.106 0.894 23 H 0.066 0.934 24 H 0.121 0.879 25 H 0.058 0.942 26 H 0.403 0.597 27 H 0.094 0.906 28 H 0.282 0.718 29 H 0.105 0.895 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 0.507 3.582 9.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.002 3.998 3 H 0.070 0.930 4 C -0.028 4.028 5 N -0.400 5.400 6 C 0.071 3.929 7 C -0.299 4.299 8 C 0.077 3.923 9 C -0.585 4.585 10 H 0.090 0.910 11 C -0.211 4.211 12 N -0.443 5.443 13 Si 0.939 3.061 14 H -0.189 1.189 15 H -0.193 1.193 16 H -0.191 1.191 17 C -0.269 4.269 18 C -0.093 4.093 19 C -0.128 4.128 20 O -0.251 6.251 21 H 0.086 0.914 22 H 0.124 0.876 23 H 0.085 0.915 24 H 0.139 0.861 25 H 0.076 0.924 26 H 0.239 0.761 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.976 0.470 4.423 9.132 hybrid contribution -0.909 0.325 -0.677 1.179 sum -8.885 0.795 3.746 9.675 Atomic orbital electron populations 1.21725 0.89156 1.03703 1.04213 1.22903 0.97302 0.94449 0.85136 0.93021 1.22348 0.79948 1.00735 0.99742 1.44673 1.05984 1.81692 1.07621 1.17788 0.92283 0.97097 0.85775 1.20400 0.93110 1.19155 0.97217 1.17789 0.94042 0.89281 0.91194 1.20668 0.93321 1.33589 1.10878 0.91035 1.28398 1.06786 0.95106 0.90852 1.70528 1.26670 1.10601 1.36505 0.82958 0.70125 0.75252 0.77784 1.18898 1.19270 1.19128 1.20609 0.93837 1.15153 0.97285 1.19924 0.94130 1.00602 0.94662 1.18180 0.83932 1.18094 0.92561 1.85802 1.20758 1.75422 1.43075 0.91447 0.87562 0.91464 0.86052 0.92420 0.76115 0.88801 0.90569 0.87681 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.59 71.98 0.69 -2.03 16 2 C 0.06 1.86 3.57 30.77 0.11 1.97 16 3 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.10 2.84 6.65 86.40 0.57 3.41 16 5 N -0.76 -29.28 5.92 -336.24 -1.99 -31.28 16 6 C 0.17 8.27 6.49 38.11 0.25 8.52 16 7 C -0.27 -14.81 7.83 22.80 0.18 -14.63 16 8 C 0.08 4.51 5.30 -21.28 -0.11 4.40 16 9 C -0.56 -31.09 8.97 23.39 0.21 -30.88 16 10 H 0.07 3.90 7.96 -2.91 -0.02 3.88 16 11 C 0.00 0.22 4.93 85.23 0.42 0.64 16 12 N -0.82 -45.20 12.31 21.81 0.27 -44.93 16 13 Si 1.12 44.31 30.00 68.60 2.06 46.37 16 14 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 15 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 16 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 17 C -0.25 -12.89 9.73 22.49 0.22 -12.67 16 18 C -0.07 -3.57 9.89 22.10 0.22 -3.35 16 19 C -0.08 -3.87 6.55 22.95 0.15 -3.72 16 20 O -0.33 -13.87 9.96 -90.84 -0.90 -14.77 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.40 14.24 8.90 -92.71 -0.83 13.41 16 27 H 0.09 5.24 6.49 -2.91 -0.02 5.22 16 28 H 0.28 16.33 6.71 -92.71 -0.62 15.71 16 29 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 30 H 0.12 5.14 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -65.13 254.04 2.80 -62.32 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.47 Total: 30.64 kcal Atomic # 6 Polarization: -51.25 SS G_CDS: 2.91 Total: -48.35 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -1.72 Total: -76.21 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.90 Total: -14.77 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.06 Total: 46.37 kcal Total: -65.13 2.80 -62.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865376.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.156 kcal (2) G-P(sol) polarization free energy of solvation -65.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds