Wall clock time and date at job start Mon Mar 30 2020 02:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47913 * 110.99872 * 2 1 4 4 C 1.54597 * 102.60643 * 265.40494 * 3 2 1 5 5 C 1.51589 * 102.84097 * 334.45405 * 4 3 2 6 6 C 1.38063 * 131.50763 * 196.19767 * 5 4 3 7 7 C 1.38321 * 120.21938 * 179.62576 * 6 5 4 8 8 C 1.38227 * 119.95047 * 359.97438 * 7 6 5 9 9 C 1.38503 * 120.18098 * 0.16132 * 8 7 6 10 10 O 1.35803 * 119.96048 * 180.18205 * 9 8 7 11 11 C 1.34800 * 116.99964 * 354.38772 * 10 9 8 12 12 H 1.08000 * 120.00457 * 5.07104 * 11 10 9 13 13 C 1.38633 * 119.99604 * 185.07434 * 11 10 9 14 14 N 1.31572 * 120.00068 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99882 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46737 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47070 * 119.99671 * 15 13 11 18 18 H 1.48496 * 109.47225 * 239.99972 * 15 13 11 19 19 C 1.38771 * 107.97319 * 16.04405 * 5 4 3 20 20 H 1.08997 * 109.47714 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46918 * 299.95247 * 1 2 3 22 22 H 1.08999 * 109.47420 * 59.94415 * 1 2 3 23 23 H 1.08996 * 110.78421 * 23.68968 * 3 2 1 24 24 H 1.09005 * 110.77898 * 147.13057 * 3 2 1 25 25 H 1.08994 * 110.73826 * 92.78979 * 4 3 2 26 26 H 1.08999 * 110.74007 * 215.93871 * 4 3 2 27 27 H 1.07998 * 119.88876 * 359.60465 * 6 5 4 28 28 H 1.08007 * 120.02585 * 180.02562 * 7 6 5 29 29 H 1.07996 * 119.90523 * 180.13609 * 8 7 6 30 30 H 0.97006 * 119.99645 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 2.2328 1.6526 -1.5039 5 6 2.4323 0.2609 -2.0706 6 6 2.9605 -0.1713 -3.2708 7 6 3.0393 -1.5237 -3.5500 8 6 2.5886 -2.4467 -2.6250 9 6 2.0548 -2.0212 -1.4199 10 8 1.6167 -2.9320 -0.5129 11 6 1.6218 -4.2254 -0.8929 12 1 2.0400 -4.5059 -1.8483 13 6 1.0903 -5.1954 -0.0572 14 7 0.5813 -4.8537 1.1070 15 14 1.0980 -6.9878 -0.5834 16 1 1.7227 -7.1069 -1.9253 17 1 1.8742 -7.7883 0.3974 18 1 -0.2973 -7.4928 -0.6409 19 6 1.9712 -0.6532 -1.1338 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5131 0.8904 22 1 -0.3634 0.5147 -0.8895 23 1 1.2664 2.0764 0.4094 24 1 2.9368 1.4352 0.5531 25 1 1.3602 2.1296 -1.9501 26 1 3.1230 2.2638 -1.6519 27 1 3.3130 0.5491 -3.9941 28 1 3.4535 -1.8583 -4.4897 29 1 2.6525 -3.5026 -2.8429 30 1 0.2097 -5.5326 1.6919 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259944151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:02 Heat of formation + Delta-G solvation = 16.937376 kcal Electronic energy + Delta-G solvation = -14668.312573 eV Core-core repulsion = 12236.723740 eV Total energy + Delta-G solvation = -2431.588833 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07836 -37.65851 -35.40509 -32.31649 -31.03154 -28.77913 -27.98517 -25.30723 -25.08879 -22.17593 -20.79106 -20.19579 -17.62217 -16.75166 -15.66699 -15.11340 -14.80182 -14.46568 -13.81041 -13.65317 -13.29869 -12.74474 -12.53614 -12.42005 -11.89279 -11.63908 -11.40077 -11.29204 -11.03884 -10.83204 -10.60940 -10.49098 -10.37567 -9.38054 -8.84501 -8.64987 -7.53558 -6.90014 -6.40073 -3.97907 2.08490 2.36925 3.14459 3.15785 3.21251 3.99361 4.32938 4.51360 5.01187 5.12068 5.25392 5.33505 5.44322 5.75049 5.82659 5.89380 5.93365 6.00041 6.05654 6.15298 6.34663 6.46950 6.65300 6.71271 6.99580 7.18080 7.27515 7.37247 7.59259 7.63430 7.99988 8.06900 9.04789 9.77323 10.77227 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037530 B = 0.009266 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.887079 B = 3021.180011 C = 3652.198425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.478 5.478 3 C 0.050 3.950 4 C -0.106 4.106 5 C -0.101 4.101 6 C -0.184 4.184 7 C -0.082 4.082 8 C -0.226 4.226 9 C 0.165 3.835 10 O -0.166 6.166 11 C -0.393 4.393 12 H 0.091 0.909 13 C 0.040 3.960 14 N -0.858 5.858 15 Si 0.939 3.061 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.277 1.277 19 C 0.013 3.987 20 H 0.079 0.921 21 H 0.063 0.937 22 H 0.020 0.980 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 8.140 -5.052 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.196 5.196 3 C -0.077 4.077 4 C -0.144 4.144 5 C -0.104 4.104 6 C -0.204 4.204 7 C -0.101 4.101 8 C -0.246 4.246 9 C 0.110 3.890 10 O -0.068 6.068 11 C -0.469 4.469 12 H 0.109 0.891 13 C -0.165 4.165 14 N -0.492 5.492 15 Si 0.764 3.236 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.083 4.083 20 H 0.098 0.902 21 H 0.081 0.919 22 H 0.039 0.961 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.402 7.776 -4.090 8.897 hybrid contribution -0.186 -0.563 -1.025 1.184 sum 1.216 7.213 -5.115 8.926 Atomic orbital electron populations 1.22417 0.86608 1.03280 0.99213 1.60073 1.07885 1.12851 1.38787 1.23108 1.00752 0.88982 0.94906 1.21616 1.01760 0.94553 0.96474 1.20526 1.01579 0.94109 0.94191 1.19840 1.08555 0.95194 0.96808 1.20672 0.98757 0.92547 0.98100 1.20955 1.08038 1.00431 0.95208 1.18831 0.93487 0.87521 0.89155 1.84067 1.71931 1.15725 1.35104 1.21389 1.40826 0.79763 1.04957 0.89146 1.25268 0.96014 0.99892 0.95284 1.70078 1.36344 1.34214 1.08597 0.85680 0.78304 0.80848 0.78779 1.19134 1.20170 1.20213 1.18488 1.07543 0.90668 0.91606 0.90247 0.91852 0.96123 0.90565 0.89935 0.90969 0.90401 0.87787 0.87096 0.85057 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.29 60.06 0.56 1.15 16 2 N -0.48 -9.93 5.33 -176.67 -0.94 -10.88 16 3 C 0.05 0.79 7.00 -2.43 -0.02 0.77 16 4 C -0.11 -1.61 6.97 -26.61 -0.19 -1.79 16 5 C -0.10 -1.96 6.23 -104.05 -0.65 -2.60 16 6 C -0.18 -3.38 10.03 -39.62 -0.40 -3.77 16 7 C -0.08 -1.56 10.05 -39.56 -0.40 -1.96 16 8 C -0.23 -5.07 9.15 -39.49 -0.36 -5.43 16 9 C 0.17 4.17 6.68 -38.82 -0.26 3.91 16 10 O -0.17 -4.83 9.76 -0.03 0.00 -4.83 16 11 C -0.39 -11.11 9.48 30.88 0.29 -10.81 16 12 H 0.09 2.37 5.19 -52.49 -0.27 2.09 16 13 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 14 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 15 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 C 0.01 0.30 5.54 -83.19 -0.46 -0.17 16 20 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 21 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.08 1.00 7.76 -51.93 -0.40 0.59 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.13 2.90 5.61 -52.49 -0.29 2.61 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 257.35 15.07 3.88 3.88 Total: -1.00 -31.45 257.35 -6.79 -38.23 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.49 Total: 2.22 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.97 Total: -19.69 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.18 Total: -35.48 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: 0.00 Total: -4.83 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.45 -6.79 -38.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.171 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds