Wall clock time and date at job start Mon Mar 30 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47162 * 213.05867 * 3 2 1 5 5 C 1.34953 * 126.03703 * 125.25828 * 4 3 2 6 6 C 1.35314 * 107.74242 * 180.14472 * 5 4 3 7 7 C 1.50703 * 126.03506 * 179.87062 * 6 5 4 8 8 H 1.08994 * 109.47874 * 359.72298 * 7 6 5 9 9 C 1.50708 * 109.46925 * 119.72117 * 7 6 5 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 7 6 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 7 6 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.53003 * 109.47211 * 239.71747 * 7 6 5 18 18 N 1.46907 * 109.46884 * 65.00489 * 17 7 6 19 19 C 1.39868 * 107.92360 * 359.61769 * 6 5 4 20 20 N 1.30833 * 108.20256 * 0.23433 * 19 6 5 21 21 H 4.40633 * 5.51411 * 179.97438 * 4 1 2 22 22 H 1.09006 * 109.47536 * 93.06069 * 3 2 1 23 23 H 1.09003 * 109.47660 * 333.06111 * 3 2 1 24 24 H 1.08001 * 126.12780 * 0.02562 * 5 4 3 25 25 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 26 26 H 1.09006 * 109.47156 * 185.00219 * 17 7 6 27 27 H 1.08992 * 109.47487 * 305.00385 * 17 7 6 28 28 H 1.00899 * 110.99672 * 56.04439 * 18 17 7 29 29 H 1.00893 * 111.00193 * 179.97438 * 18 17 7 30 30 H 1.07998 * 125.89498 * 180.26268 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1585 0.7534 5 6 3.9924 1.1241 1.7940 6 6 4.1864 2.3968 2.2107 7 6 5.0695 2.8311 3.3521 8 1 5.5346 1.9557 3.8052 9 6 6.1400 3.7572 2.8346 10 1 6.1768 4.0066 1.7845 11 6 7.0717 4.2868 3.7020 12 7 8.0055 5.0954 3.2506 13 14 7.0076 3.8559 5.5185 14 1 6.1521 4.8390 6.2306 15 1 8.3800 3.8923 6.0847 16 1 6.4397 2.4939 5.6845 17 6 4.2268 3.5609 4.4000 18 7 3.2611 2.6244 4.9905 19 6 3.4271 3.2385 1.3914 20 7 2.7957 2.4973 0.5175 21 1 -1.0501 -0.0002 -0.0003 22 1 3.0094 0.0557 -1.0262 23 1 3.0098 -0.9153 0.4656 24 1 4.4424 0.2392 2.2194 25 1 8.6612 5.4677 3.8608 26 1 4.8779 3.9523 5.1816 27 1 3.6917 4.3842 3.9268 28 1 3.7293 1.8196 5.3792 29 1 2.6923 3.0826 5.6865 30 1 3.3719 4.3144 1.4669 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259946368.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:58 Heat of formation + Delta-G solvation = 116.818015 kcal Electronic energy + Delta-G solvation = -14236.497649 eV Core-core repulsion = 11841.532717 eV Total energy + Delta-G solvation = -2394.964932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.92700 -37.36613 -35.47483 -34.29308 -32.65064 -31.90035 -29.67008 -27.43401 -25.33702 -23.23107 -22.06488 -20.76518 -19.11787 -18.68348 -17.71909 -16.88196 -16.23394 -16.18208 -15.32369 -15.11659 -14.91004 -14.82799 -14.24782 -14.12510 -13.49666 -13.13804 -12.79128 -12.35701 -12.04979 -11.74254 -11.58128 -11.47860 -11.23472 -11.04049 -10.72678 -10.15754 -9.39077 -8.94135 -8.23115 -6.26970 1.10431 1.32368 1.33372 1.37409 1.48199 1.83540 2.19378 2.35446 2.38669 3.10792 3.37609 3.88482 3.95721 4.19065 4.36751 4.41361 4.49850 4.66136 4.88383 4.92366 5.02740 5.16102 5.28035 5.64165 5.77518 5.91739 6.28119 6.36680 6.47617 6.61504 6.71396 6.85770 6.95606 7.37163 8.93584 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.045060 B = 0.007641 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.238772 B = 3663.755004 C = 3948.856016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.242 4.242 3 C 0.243 3.757 4 N -0.381 5.381 5 C 0.044 3.956 6 C -0.181 4.181 7 C 0.092 3.908 8 H 0.034 0.966 9 C -0.502 4.502 10 H 0.030 0.970 11 C 0.010 3.990 12 N -0.952 5.952 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.303 1.303 16 H -0.241 1.241 17 C 0.072 3.928 18 N -0.842 5.842 19 C 0.045 3.955 20 N -0.329 5.329 21 H 0.250 0.750 22 H 0.113 0.887 23 H 0.151 0.849 24 H 0.199 0.801 25 H 0.264 0.736 26 H 0.004 0.996 27 H 0.057 0.943 28 H 0.340 0.660 29 H 0.341 0.659 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 -12.228 0.299 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.243 4.243 3 C 0.124 3.876 4 N -0.165 5.165 5 C -0.100 4.100 6 C -0.191 4.191 7 C 0.072 3.928 8 H 0.052 0.948 9 C -0.541 4.541 10 H 0.049 0.951 11 C -0.186 4.186 12 N -0.592 5.592 13 Si 0.783 3.217 14 H -0.201 1.201 15 H -0.231 1.231 16 H -0.165 1.165 17 C -0.059 4.059 18 N -0.371 5.371 19 C -0.140 4.140 20 N -0.151 5.151 21 H 0.266 0.734 22 H 0.131 0.869 23 H 0.169 0.831 24 H 0.216 0.784 25 H 0.073 0.927 26 H 0.022 0.978 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.615 -12.333 -1.482 17.704 hybrid contribution 1.366 0.834 2.113 2.651 sum -11.249 -11.499 0.631 16.098 Atomic orbital electron populations 1.25797 0.96889 0.97204 0.98411 1.23413 0.95300 1.03007 1.02590 1.18730 0.84392 0.86077 0.98413 1.48527 1.36290 1.05082 1.26599 1.22585 0.96062 0.99866 0.91507 1.20005 1.04508 0.92181 1.02446 1.17458 0.90458 0.94642 0.90266 0.94794 1.21250 1.11038 1.27022 0.94821 0.95148 1.25905 0.94686 0.94559 1.03494 1.70059 1.18021 1.33952 1.37199 0.85746 0.75741 0.80318 0.79878 1.20092 1.23110 1.16494 1.22065 0.92832 0.95273 0.95729 1.58744 1.26760 1.11197 1.40426 1.23651 0.96315 0.99956 0.94107 1.77129 1.25159 0.88069 1.24769 0.73410 0.86893 0.83119 0.78373 0.92698 0.97817 0.92487 0.84740 0.84623 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 19.25 74.32 1.43 -2.11 16 2 C -0.24 -6.03 13.52 31.12 0.42 -5.61 16 3 C 0.24 5.55 6.99 84.57 0.59 6.14 16 4 N -0.38 -12.62 3.65 -357.15 -1.30 -13.92 16 5 C 0.04 1.50 11.34 83.54 0.95 2.44 16 6 C -0.18 -7.51 4.47 -20.14 -0.09 -7.60 16 7 C 0.09 4.14 1.87 -12.28 -0.02 4.12 16 8 H 0.03 1.49 7.17 -2.39 -0.02 1.47 16 9 C -0.50 -28.12 9.00 25.60 0.23 -27.89 16 10 H 0.03 1.93 7.97 -2.92 -0.02 1.91 16 11 C 0.01 0.57 5.45 84.65 0.46 1.03 16 12 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 13 Si 0.96 43.65 24.41 68.60 1.67 45.32 16 14 H -0.27 -12.10 6.83 99.48 0.68 -11.42 16 15 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 16 H -0.24 -9.81 6.53 99.48 0.65 -9.16 16 17 C 0.07 2.92 5.62 86.30 0.48 3.41 16 18 N -0.84 -27.42 9.34 -186.70 -1.74 -29.16 16 19 C 0.04 1.92 11.42 85.24 0.97 2.89 16 20 N -0.33 -13.27 12.39 -57.03 -0.71 -13.97 16 21 H 0.25 3.20 7.80 -4.41 -0.03 3.17 16 22 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 23 H 0.15 2.21 8.07 -2.39 -0.02 2.19 16 24 H 0.20 5.14 8.06 -2.91 -0.02 5.11 16 25 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.00 0.18 3.21 -2.38 -0.01 0.17 16 27 H 0.06 2.43 7.88 -2.39 -0.02 2.41 16 28 H 0.34 10.04 8.99 -89.69 -0.81 9.23 16 29 H 0.34 9.40 9.08 -89.70 -0.81 8.59 16 30 H 0.17 7.05 8.06 -2.91 -0.02 7.03 16 Total: -1.00 -72.56 265.88 3.10 -69.46 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.54 Total: 24.27 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 5.43 Total: -23.16 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -3.46 Total: -115.88 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.67 Total: 45.32 kcal Total: -72.56 3.10 -69.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946368.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.274 kcal (2) G-P(sol) polarization free energy of solvation -72.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds