Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38629 * 120.71775 * 264.71540 * 10 9 7 12 12 N 1.32265 * 119.19529 * 179.76849 * 11 10 9 13 13 C 1.32503 * 120.73771 * 0.51964 * 12 11 10 14 14 N 1.38407 * 119.22056 * 179.75262 * 13 12 11 15 15 N 1.32486 * 121.56577 * 359.73225 * 13 12 11 16 16 C 1.32292 * 120.74245 * 359.97438 * 15 13 12 17 17 C 1.50696 * 120.40105 * 179.97438 * 16 15 13 18 18 C 1.53005 * 117.49969 * 8.64033 * 17 16 15 19 19 C 1.53003 * 60.00001 * 252.51269 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07999 * 120.40126 * 0.02562 * 11 10 9 24 24 H 0.96993 * 120.00549 * 179.97438 * 14 13 12 25 25 H 0.97001 * 119.99420 * 359.97438 * 14 13 12 26 26 H 1.08992 * 115.55098 * 154.35615 * 17 16 15 27 27 H 1.08997 * 117.49658 * 0.02562 * 18 17 16 28 28 H 1.09000 * 117.49628 * 145.02658 * 18 17 16 29 29 H 1.08998 * 117.49845 * 252.50883 * 19 18 17 30 30 H 1.09002 * 117.51728 * 107.48262 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6070 -4.2489 -1.1998 12 7 3.4722 -5.2489 -1.1696 13 6 3.9690 -5.6801 -0.0194 14 7 4.8684 -6.7322 -0.0239 15 7 3.6257 -5.1279 1.1349 16 6 2.7694 -4.1202 1.1743 17 6 2.3838 -3.4982 2.4916 18 6 3.1630 -3.9346 3.7340 19 6 1.7202 -4.4023 3.5324 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.2023 -3.9046 -2.1400 24 1 5.2394 -7.0567 0.8115 25 1 5.1276 -7.1449 -0.8625 26 1 2.0538 -2.4606 2.4429 27 1 3.9548 -4.6713 3.5984 28 1 3.3459 -3.1839 4.5028 29 1 0.9540 -3.9593 4.1686 30 1 1.5623 -5.4469 3.2642 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259981525.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = 64.811740 kcal Electronic energy + Delta-G solvation = -14367.679616 eV Core-core repulsion = 11970.459522 eV Total energy + Delta-G solvation = -2397.220094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.40756 -36.85659 -34.74315 -33.10397 -32.51256 -30.87297 -26.76679 -24.81084 -23.51712 -21.95259 -21.14623 -20.45590 -17.65563 -16.85422 -16.36096 -15.38971 -14.81878 -14.68290 -14.39149 -13.92558 -13.21880 -12.98400 -12.34016 -11.72674 -11.31771 -11.20285 -11.15507 -10.82466 -10.64813 -10.47954 -10.28861 -9.96592 -9.50337 -9.37422 -9.27860 -8.57263 -8.34150 -7.41228 -6.07227 -4.11779 1.75975 1.99682 3.27162 3.35617 3.40651 3.61445 4.20027 4.40646 4.68823 4.74391 5.05513 5.26629 5.36213 5.49660 5.63073 5.79658 5.98047 6.01252 6.20894 6.29500 6.53807 6.60607 6.77982 7.05807 7.47675 7.52009 7.56453 7.73103 7.87483 7.95949 8.27909 8.93629 8.96543 9.52695 11.01595 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.027879 B = 0.009236 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.091338 B = 3030.771248 C = 3541.411624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.065 3.935 10 C -0.181 4.181 11 C 0.172 3.828 12 N -0.577 5.577 13 C 0.535 3.465 14 N -0.836 5.836 15 N -0.571 5.571 16 C 0.236 3.764 17 C -0.103 4.103 18 C -0.164 4.164 19 C -0.162 4.162 20 H 0.262 0.738 21 H 0.035 0.965 22 H 0.029 0.971 23 H 0.163 0.837 24 H 0.406 0.594 25 H 0.407 0.593 26 H 0.143 0.857 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 -9.033 3.436 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.188 4.188 11 C 0.007 3.993 12 N -0.300 5.300 13 C 0.176 3.824 14 N -0.387 5.387 15 N -0.294 5.294 16 C 0.090 3.910 17 C -0.122 4.122 18 C -0.202 4.202 19 C -0.200 4.200 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.180 0.820 24 H 0.236 0.764 25 H 0.237 0.763 26 H 0.161 0.839 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.623 -9.634 3.407 11.664 hybrid contribution 0.159 1.371 -0.170 1.390 sum 5.782 -8.264 3.237 10.593 Atomic orbital electron populations 1.69960 1.05960 1.26744 1.50360 1.24980 0.94830 0.99116 0.95143 0.86537 0.80196 0.83668 0.77685 1.19739 1.20926 1.20907 1.21086 0.92940 0.89858 1.51088 0.92681 1.18118 0.91925 0.88586 0.98656 1.21840 1.02964 1.00972 0.93019 1.22812 0.89695 0.88276 0.98538 1.67761 1.15898 1.17830 1.28487 1.19132 0.89489 0.88750 0.85018 1.41463 1.49129 1.36251 1.11864 1.67397 1.19230 1.14287 1.28494 1.20244 0.88375 0.88169 0.94251 1.21107 1.04949 1.00513 0.85636 1.22884 0.94960 1.03527 0.98781 1.22871 0.96049 0.99390 1.01698 0.92850 0.94706 0.95268 0.81967 0.76393 0.76313 0.83942 0.88087 0.88980 0.88517 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.73 8.67 -34.44 -0.30 -14.02 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.07 1.60 4.48 -29.03 -0.13 1.47 16 10 C -0.18 -3.97 5.10 -104.35 -0.53 -4.50 16 11 C 0.17 3.48 10.98 -17.22 -0.19 3.29 16 12 N -0.58 -11.23 10.46 -13.93 -0.15 -11.38 16 13 C 0.54 9.85 8.67 -322.80 -2.80 7.05 16 14 N -0.84 -11.20 9.07 29.76 0.27 -10.93 16 15 N -0.57 -11.04 9.51 -10.16 -0.10 -11.14 16 16 C 0.24 4.86 6.48 -82.27 -0.53 4.32 16 17 C -0.10 -1.93 5.23 -91.77 -0.48 -2.42 16 18 C -0.16 -2.54 10.04 -26.73 -0.27 -2.81 16 19 C -0.16 -2.52 10.23 -26.73 -0.27 -2.79 16 20 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 21 H 0.03 0.89 7.06 -51.93 -0.37 0.52 16 22 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 23 H 0.16 2.97 8.06 -52.49 -0.42 2.55 16 24 H 0.41 4.56 8.94 -40.82 -0.37 4.19 16 25 H 0.41 4.57 8.94 -40.82 -0.37 4.21 16 26 H 0.14 2.96 6.75 -51.93 -0.35 2.61 16 27 H 0.10 1.58 7.60 -51.93 -0.39 1.18 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 264.42 15.07 3.98 3.98 Total: -1.00 -29.86 264.42 -9.37 -39.23 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -3.49 Total: 7.65 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -5.60 Total: -8.83 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.76 Total: -58.05 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.86 -9.37 -39.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981525.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.041 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds