Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38629 * 120.71775 * 264.71540 * 10 9 7 12 12 N 1.32265 * 119.19529 * 179.76849 * 11 10 9 13 13 C 1.32503 * 120.73771 * 0.51964 * 12 11 10 14 14 N 1.38407 * 119.22056 * 179.75262 * 13 12 11 15 15 N 1.32486 * 121.56577 * 359.73225 * 13 12 11 16 16 C 1.32292 * 120.74245 * 359.97438 * 15 13 12 17 17 C 1.50696 * 120.40105 * 179.97438 * 16 15 13 18 18 C 1.53005 * 117.49969 * 8.64033 * 17 16 15 19 19 C 1.53003 * 60.00001 * 252.51269 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07999 * 120.40126 * 0.02562 * 11 10 9 24 24 H 0.96993 * 120.00549 * 179.97438 * 14 13 12 25 25 H 0.97001 * 119.99420 * 359.97438 * 14 13 12 26 26 H 1.08992 * 115.55098 * 154.35615 * 17 16 15 27 27 H 1.08997 * 117.49658 * 0.02562 * 18 17 16 28 28 H 1.09000 * 117.49628 * 145.02658 * 18 17 16 29 29 H 1.08998 * 117.49845 * 252.50883 * 19 18 17 30 30 H 1.09002 * 117.51728 * 107.48262 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6070 -4.2489 -1.1998 12 7 3.4722 -5.2489 -1.1696 13 6 3.9690 -5.6801 -0.0194 14 7 4.8684 -6.7322 -0.0239 15 7 3.6257 -5.1279 1.1349 16 6 2.7694 -4.1202 1.1743 17 6 2.3838 -3.4982 2.4916 18 6 3.1630 -3.9346 3.7340 19 6 1.7202 -4.4023 3.5324 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.2023 -3.9046 -2.1400 24 1 5.2394 -7.0567 0.8115 25 1 5.1276 -7.1449 -0.8625 26 1 2.0538 -2.4606 2.4429 27 1 3.9548 -4.6713 3.5984 28 1 3.3459 -3.1839 4.5028 29 1 0.9540 -3.9593 4.1686 30 1 1.5623 -5.4469 3.2642 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259981525.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = 47.582228 kcal Electronic energy + Delta-G solvation = -14368.426744 eV Core-core repulsion = 11970.459522 eV Total energy + Delta-G solvation = -2397.967221 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.91718 -38.22066 -36.29399 -34.93258 -33.99459 -32.60038 -28.59497 -26.30836 -25.33445 -23.22415 -22.81047 -21.91007 -19.08835 -18.45799 -18.21872 -16.72975 -16.65182 -16.09455 -15.89127 -15.35027 -14.90960 -14.47571 -14.32315 -13.49926 -13.11859 -12.84981 -12.56367 -12.42812 -12.35461 -12.18310 -11.85840 -11.41148 -11.26866 -11.18087 -10.67338 -10.58394 -9.96790 -8.93176 -8.14385 -6.27284 0.21314 0.42956 1.40311 1.42743 1.54192 2.31480 2.42561 2.81694 3.15353 3.20410 3.29635 3.62759 3.98724 4.18211 4.27997 4.32625 4.44465 4.63429 4.79533 4.95221 5.09710 5.28561 5.37774 5.38792 5.56369 5.68962 5.77811 6.09252 6.22103 6.48959 6.52720 6.83700 7.40649 7.55260 8.93029 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.027879 B = 0.009236 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.091338 B = 3030.771248 C = 3541.411624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.045 0.955 9 C 0.082 3.918 10 C -0.216 4.216 11 C 0.174 3.826 12 N -0.584 5.584 13 C 0.531 3.469 14 N -0.810 5.810 15 N -0.573 5.573 16 C 0.238 3.762 17 C -0.139 4.139 18 C -0.142 4.142 19 C -0.144 4.144 20 H 0.265 0.735 21 H 0.016 0.984 22 H 0.009 0.991 23 H 0.174 0.826 24 H 0.420 0.580 25 H 0.420 0.580 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.547 -9.728 4.198 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.063 0.937 9 C 0.044 3.956 10 C -0.223 4.223 11 C 0.009 3.991 12 N -0.308 5.308 13 C 0.171 3.829 14 N -0.362 5.362 15 N -0.297 5.297 16 C 0.091 3.909 17 C -0.158 4.158 18 C -0.179 4.179 19 C -0.182 4.182 20 H 0.074 0.926 21 H 0.034 0.966 22 H 0.027 0.973 23 H 0.191 0.809 24 H 0.252 0.748 25 H 0.253 0.747 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.057 -10.381 4.169 13.227 hybrid contribution -0.223 1.471 -0.398 1.540 sum 6.834 -8.910 3.771 11.846 Atomic orbital electron populations 1.70060 1.07311 1.27716 1.51302 1.25734 0.95598 1.02375 0.94794 0.85553 0.78824 0.79663 0.77954 1.19598 1.20364 1.20117 1.21277 0.92520 0.91213 1.50698 0.93705 1.17770 0.91929 0.89300 0.96623 1.21610 1.04481 1.01694 0.94564 1.22975 0.89445 0.88148 0.98536 1.67860 1.16221 1.17832 1.28848 1.19645 0.89430 0.89155 0.84675 1.41452 1.47089 1.34228 1.13474 1.67509 1.19269 1.14263 1.28636 1.20465 0.87814 0.88086 0.94521 1.20991 1.08581 0.99798 0.86415 1.22969 0.94861 1.03351 0.96689 1.22960 0.96780 0.98814 0.99620 0.92597 0.96565 0.97305 0.80885 0.74776 0.74749 0.86742 0.87856 0.86954 0.86776 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 2 C 0.01 0.76 5.46 84.66 0.46 1.22 16 3 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.52 -28.56 8.67 25.60 0.22 -28.34 16 8 H 0.04 2.51 7.74 -2.91 -0.02 2.48 16 9 C 0.08 4.20 4.48 29.10 0.13 4.33 16 10 C -0.22 -9.66 5.10 -19.69 -0.10 -9.76 16 11 C 0.17 7.09 10.98 84.72 0.93 8.02 16 12 N -0.58 -22.09 10.46 -197.97 -2.07 -24.16 16 13 C 0.53 18.58 8.67 261.49 2.27 20.85 16 14 N -0.81 -19.40 9.07 -59.75 -0.54 -19.94 16 15 N -0.57 -21.38 9.51 -186.05 -1.77 -23.15 16 16 C 0.24 9.78 6.48 42.57 0.28 10.05 16 17 C -0.14 -5.18 5.23 -11.54 -0.06 -5.24 16 18 C -0.14 -4.10 10.04 30.60 0.31 -3.79 16 19 C -0.14 -4.24 10.23 30.60 0.31 -3.93 16 20 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 21 H 0.02 0.87 7.06 -2.38 -0.02 0.85 16 22 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 23 H 0.17 6.42 8.06 -2.91 -0.02 6.40 16 24 H 0.42 8.05 8.94 -92.71 -0.83 7.22 16 25 H 0.42 8.15 8.94 -92.71 -0.83 7.32 16 26 H 0.11 4.92 6.75 -2.39 -0.02 4.90 16 27 H 0.10 2.97 7.60 -2.39 -0.02 2.95 16 28 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -63.79 264.42 2.20 -61.59 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.48 Total: 20.01 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.75 Total: -6.59 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -4.10 Total: -120.48 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -63.79 2.20 -61.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981525.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.175 kcal (2) G-P(sol) polarization free energy of solvation -63.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds