Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00058 * 2 1 4 4 H 1.48493 * 109.47100 * 270.00067 * 3 2 1 5 5 H 1.48499 * 109.47046 * 30.00481 * 3 2 1 6 6 H 1.48504 * 109.46791 * 150.00187 * 3 2 1 7 7 C 1.37880 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00364 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99831 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46714 * 180.02562 * 9 7 2 11 11 C 1.38408 * 119.99774 * 180.02562 * 10 9 7 12 12 N 1.32512 * 119.19196 * 359.97438 * 11 10 9 13 13 C 1.32278 * 120.68783 * 180.02562 * 12 11 10 14 14 C 1.38596 * 119.15063 * 0.02685 * 13 12 11 15 15 C 1.38435 * 118.71665 * 359.97438 * 14 13 12 16 16 N 1.32408 * 119.08312 * 0.02562 * 15 14 13 17 17 C 1.51189 * 109.70921 * 179.97438 * 15 14 13 18 18 C 1.54659 * 105.21131 * 17.09674 * 17 15 14 19 19 C 1.51090 * 131.42583 * 179.97438 * 14 13 12 20 20 H 0.97002 * 120.00156 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46602 * 60.00421 * 9 7 2 22 22 H 1.08994 * 109.47106 * 300.00250 * 9 7 2 23 23 H 0.96997 * 120.00087 * 0.02562 * 10 9 7 24 24 H 1.07998 * 120.42263 * 180.02562 * 13 12 11 25 25 H 1.09004 * 110.29656 * 136.00558 * 17 15 14 26 26 H 1.09003 * 110.30121 * 258.05026 * 17 15 14 27 27 H 1.09004 * 110.89154 * 215.60887 * 18 17 15 28 28 H 1.08992 * 110.84565 * 92.00098 * 18 17 15 29 29 H 1.09002 * 110.30717 * 281.88856 * 19 14 13 30 30 H 1.08997 * 110.30731 * 43.94939 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7416 -4.9176 -0.0011 12 7 0.4356 -5.1414 -0.0011 13 6 -0.0378 -6.3766 -0.0011 14 6 0.8509 -7.4401 -0.0005 15 6 2.2091 -7.1720 -0.0005 16 7 2.6164 -5.9121 -0.0005 17 6 2.9849 -8.4696 0.0008 18 6 1.9690 -9.5503 -0.4372 19 6 0.6226 -8.9336 0.0002 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 3.1566 -3.4354 -0.0002 24 1 -1.1031 -6.5540 -0.0015 25 1 3.8104 -8.4174 -0.7092 26 1 3.3605 -8.6847 1.0012 27 1 2.1521 -10.4900 0.0841 28 1 1.9965 -9.6935 -1.5173 29 1 0.3572 -9.2753 1.0006 30 1 -0.1620 -9.1967 -0.7092 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260081333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 43.351179 kcal Electronic energy + Delta-G solvation = -13942.913075 eV Core-core repulsion = 11544.762382 eV Total energy + Delta-G solvation = -2398.150693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72684 -37.03619 -34.60588 -33.09052 -32.32642 -29.14417 -28.04314 -26.30245 -23.70352 -22.78085 -20.93769 -20.62451 -17.86358 -16.82413 -15.98640 -15.66822 -14.75607 -14.35606 -14.16055 -13.74009 -13.28732 -12.91174 -12.59406 -12.41508 -12.09336 -11.99452 -11.22237 -11.20355 -10.93627 -10.88054 -10.38534 -10.13668 -10.10703 -9.39104 -9.38091 -8.53985 -8.45895 -7.09400 -6.16641 -4.22869 1.67855 1.74191 3.25643 3.31387 3.34331 3.66439 4.33195 4.40618 4.42765 4.61395 4.88154 4.95337 5.19885 5.21341 5.32566 5.47766 5.69332 5.71211 5.82953 5.92550 6.05558 6.11869 6.32868 6.77636 7.26173 7.50741 7.52819 7.68525 7.89514 7.98849 8.53716 8.76617 9.12391 9.43194 10.93519 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.077473 B = 0.005493 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.330360 B = 5095.801844 C = 5418.486814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.264 3.736 10 N -0.674 5.674 11 C 0.567 3.433 12 N -0.558 5.558 13 C 0.206 3.794 14 C -0.304 4.304 15 C 0.206 3.794 16 N -0.581 5.581 17 C -0.070 4.070 18 C -0.118 4.118 19 C -0.055 4.055 20 H 0.266 0.734 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.405 0.595 24 H 0.157 0.843 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 -16.666 -0.129 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.143 3.857 10 N -0.304 5.304 11 C 0.210 3.790 12 N -0.281 5.281 13 C 0.037 3.963 14 C -0.313 4.313 15 C 0.056 3.944 16 N -0.305 5.305 17 C -0.109 4.109 18 C -0.156 4.156 19 C -0.094 4.094 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.241 0.759 24 H 0.174 0.826 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.196 -15.263 -0.124 15.421 hybrid contribution 0.410 0.286 0.012 0.500 sum 2.606 -14.978 -0.111 15.203 Atomic orbital electron populations 1.69972 1.06064 1.27298 1.48968 1.24914 0.94921 0.99360 0.94643 0.86397 0.79661 0.82523 0.78251 1.20432 1.20967 1.19718 1.21237 0.93422 0.90390 1.53219 0.91860 1.19147 0.87789 0.80899 0.97854 1.45142 1.10806 1.00566 1.73936 1.19508 0.84618 0.87111 0.87729 1.68196 1.14343 1.23079 1.22523 1.22343 0.99702 0.86005 0.88268 1.21587 0.96462 0.97316 1.15968 1.21660 0.92855 0.91427 0.88487 1.67124 1.39793 0.99153 1.24394 1.21020 0.97941 0.88944 1.02948 1.22354 0.94300 0.97423 1.01488 1.20590 0.97561 0.89894 1.01327 0.92455 0.95346 0.95346 0.75908 0.82616 0.89832 0.89232 0.90304 0.90886 0.91047 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.17 9.28 -34.44 -0.32 -15.49 16 8 H 0.06 1.68 7.60 -52.49 -0.40 1.29 16 9 C 0.26 7.13 5.40 -5.19 -0.03 7.10 16 10 N -0.67 -15.81 5.70 -63.50 -0.36 -16.17 16 11 C 0.57 12.63 8.42 -322.84 -2.72 9.91 16 12 N -0.56 -12.11 9.59 -13.94 -0.13 -12.25 16 13 C 0.21 3.52 11.30 -17.23 -0.19 3.32 16 14 C -0.30 -4.59 6.20 -104.23 -0.65 -5.23 16 15 C 0.21 3.39 7.37 -82.03 -0.60 2.78 16 16 N -0.58 -11.65 10.46 -10.02 -0.10 -11.76 16 17 C -0.07 -0.80 6.77 -26.77 -0.18 -0.98 16 18 C -0.12 -1.04 7.10 -25.12 -0.18 -1.22 16 19 C -0.06 -0.57 6.76 -26.95 -0.18 -0.75 16 20 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.41 8.87 8.43 -40.82 -0.34 8.52 16 24 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -31.56 261.48 -9.78 -41.34 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.68 Total: 2.91 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -5.15 Total: 1.17 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 0.14 Total: -65.54 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.56 -9.78 -41.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.687 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds