Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00058 * 2 1 4 4 H 1.48493 * 109.47100 * 270.00067 * 3 2 1 5 5 H 1.48499 * 109.47046 * 30.00481 * 3 2 1 6 6 H 1.48504 * 109.46791 * 150.00187 * 3 2 1 7 7 C 1.37880 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00364 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99831 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46714 * 180.02562 * 9 7 2 11 11 C 1.38408 * 119.99774 * 180.02562 * 10 9 7 12 12 N 1.32512 * 119.19196 * 359.97438 * 11 10 9 13 13 C 1.32278 * 120.68783 * 180.02562 * 12 11 10 14 14 C 1.38596 * 119.15063 * 0.02685 * 13 12 11 15 15 C 1.38435 * 118.71665 * 359.97438 * 14 13 12 16 16 N 1.32408 * 119.08312 * 0.02562 * 15 14 13 17 17 C 1.51189 * 109.70921 * 179.97438 * 15 14 13 18 18 C 1.54659 * 105.21131 * 17.09674 * 17 15 14 19 19 C 1.51090 * 131.42583 * 179.97438 * 14 13 12 20 20 H 0.97002 * 120.00156 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46602 * 60.00421 * 9 7 2 22 22 H 1.08994 * 109.47106 * 300.00250 * 9 7 2 23 23 H 0.96997 * 120.00087 * 0.02562 * 10 9 7 24 24 H 1.07998 * 120.42263 * 180.02562 * 13 12 11 25 25 H 1.09004 * 110.29656 * 136.00558 * 17 15 14 26 26 H 1.09003 * 110.30121 * 258.05026 * 17 15 14 27 27 H 1.09004 * 110.89154 * 215.60887 * 18 17 15 28 28 H 1.08992 * 110.84565 * 92.00098 * 18 17 15 29 29 H 1.09002 * 110.30717 * 281.88856 * 19 14 13 30 30 H 1.08997 * 110.30731 * 43.94939 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7416 -4.9176 -0.0011 12 7 0.4356 -5.1414 -0.0011 13 6 -0.0378 -6.3766 -0.0011 14 6 0.8509 -7.4401 -0.0005 15 6 2.2091 -7.1720 -0.0005 16 7 2.6164 -5.9121 -0.0005 17 6 2.9849 -8.4696 0.0008 18 6 1.9690 -9.5503 -0.4372 19 6 0.6226 -8.9336 0.0002 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 3.1566 -3.4354 -0.0002 24 1 -1.1031 -6.5540 -0.0015 25 1 3.8104 -8.4174 -0.7092 26 1 3.3605 -8.6847 1.0012 27 1 2.1521 -10.4900 0.0841 28 1 1.9965 -9.6935 -1.5173 29 1 0.3572 -9.2753 1.0006 30 1 -0.1620 -9.1967 -0.7092 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260081333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 23.626663 kcal Electronic energy + Delta-G solvation = -13943.768395 eV Core-core repulsion = 11544.762382 eV Total energy + Delta-G solvation = -2399.006013 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.11365 -38.33565 -36.30398 -34.72555 -34.14198 -30.51138 -29.45877 -27.90642 -25.05395 -24.68329 -22.40502 -21.63919 -19.58979 -18.40377 -17.74304 -16.80160 -16.70128 -15.78355 -15.43389 -15.18986 -14.99222 -14.25786 -14.08033 -13.82683 -13.68356 -13.17266 -12.81208 -12.78011 -12.24673 -12.10009 -12.00313 -11.59870 -11.59029 -11.48127 -10.93353 -10.51285 -9.93994 -8.73871 -8.31357 -6.47336 0.30527 0.31129 1.40557 1.43165 1.54359 2.07636 2.39597 2.94866 3.03705 3.14986 3.66354 3.67332 3.95722 4.12482 4.26056 4.41496 4.84220 4.87244 4.91694 4.95872 5.06572 5.16071 5.24692 5.27486 5.41590 5.43970 5.61584 5.80510 6.00193 6.26577 6.64216 6.80455 7.22514 7.53574 8.80601 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.077473 B = 0.005493 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.330360 B = 5095.801844 C = 5418.486814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.293 3.707 10 N -0.687 5.687 11 C 0.543 3.457 12 N -0.601 5.601 13 C 0.184 3.816 14 C -0.283 4.283 15 C 0.181 3.819 16 N -0.594 5.594 17 C -0.069 4.069 18 C -0.106 4.106 19 C -0.054 4.054 20 H 0.270 0.730 21 H -0.007 1.007 22 H -0.007 1.007 23 H 0.408 0.592 24 H 0.188 0.812 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -18.827 -0.108 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.807 3.193 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.602 4.602 8 H 0.091 0.909 9 C 0.170 3.830 10 N -0.321 5.321 11 C 0.186 3.814 12 N -0.325 5.325 13 C 0.018 3.982 14 C -0.291 4.291 15 C 0.032 3.968 16 N -0.319 5.319 17 C -0.107 4.107 18 C -0.144 4.144 19 C -0.093 4.093 20 H 0.079 0.921 21 H 0.011 0.989 22 H 0.011 0.989 23 H 0.245 0.755 24 H 0.205 0.795 25 H 0.109 0.891 26 H 0.125 0.875 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.029 -17.533 -0.105 17.793 hybrid contribution 0.082 0.704 0.011 0.709 sum 3.111 -16.829 -0.094 17.114 Atomic orbital electron populations 1.70113 1.07973 1.28616 1.49610 1.25968 0.95834 1.03491 0.93670 0.85178 0.78394 0.77104 0.78665 1.19498 1.20335 1.18548 1.21595 0.94060 0.91015 1.53511 0.90864 1.18476 0.87686 0.82416 0.94398 1.44703 1.10112 1.00687 1.76627 1.19581 0.85378 0.87106 0.89298 1.68138 1.14539 1.25948 1.23844 1.22969 1.01705 0.85307 0.88222 1.22247 0.95516 0.99809 1.11571 1.22780 0.94960 0.91611 0.87425 1.67144 1.39651 1.00350 1.24720 1.21273 0.98485 0.86647 1.04305 1.22422 0.91841 0.97635 1.02466 1.20800 0.99372 0.85804 1.03285 0.92081 0.98948 0.98937 0.75516 0.79521 0.89128 0.87545 0.86789 0.90119 0.88956 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.25 13.29 21.45 0.28 -55.96 16 2 C 0.01 0.60 5.46 84.66 0.46 1.06 16 3 Si 0.98 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.56 -32.54 9.28 25.60 0.24 -32.31 16 8 H 0.07 3.97 7.60 -2.91 -0.02 3.95 16 9 C 0.29 16.88 5.40 85.64 0.46 17.34 16 10 N -0.69 -34.24 5.70 -354.80 -2.02 -36.26 16 11 C 0.54 25.33 8.42 261.50 2.20 27.53 16 12 N -0.60 -27.24 9.59 -198.01 -1.90 -29.14 16 13 C 0.18 6.24 11.30 84.71 0.96 7.20 16 14 C -0.28 -7.98 6.20 -19.61 -0.12 -8.11 16 15 C 0.18 5.70 7.37 42.67 0.31 6.02 16 16 N -0.59 -24.23 10.46 -185.61 -1.94 -26.17 16 17 C -0.07 -1.34 6.77 30.57 0.21 -1.13 16 18 C -0.11 -1.34 7.10 31.64 0.22 -1.11 16 19 C -0.05 -0.88 6.76 30.45 0.21 -0.68 16 20 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 21 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 22 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 23 H 0.41 18.91 8.43 -92.71 -0.78 18.13 16 24 H 0.19 4.84 8.06 -2.91 -0.02 4.82 16 25 H 0.09 1.66 8.14 -2.38 -0.02 1.65 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -72.60 261.48 1.97 -70.63 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.37 Total: 15.23 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 5.15 Total: 15.82 kcal Atomic # 7 Polarization: -141.96 SS G_CDS: -5.58 Total: -147.53 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -72.60 1.97 -70.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.260 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds