Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.39050 * 119.99687 * 179.72505 * 10 9 7 12 12 C 1.39528 * 120.23641 * 0.27747 * 11 10 9 13 13 C 1.38412 * 117.83099 * 179.97438 * 12 11 10 14 14 C 1.38694 * 118.45011 * 0.02562 * 13 12 11 15 15 N 1.32070 * 119.59056 * 359.93999 * 14 13 12 16 16 N 1.28257 * 122.38872 * 359.81682 * 15 14 13 17 17 C 1.51321 * 109.50117 * 179.97438 * 14 13 12 18 18 C 1.54364 * 105.24950 * 17.14548 * 17 14 13 19 19 C 1.50993 * 131.57769 * 180.02562 * 13 12 11 20 20 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 22 22 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 23 23 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 24 24 H 1.08000 * 121.08595 * 359.95509 * 12 11 10 25 25 H 1.09008 * 110.28721 * 136.08829 * 17 14 13 26 26 H 1.09000 * 110.28853 * 258.19584 * 17 14 13 27 27 H 1.09003 * 110.81072 * 91.98308 * 18 17 14 28 28 H 1.09003 * 110.80622 * 215.29753 * 18 17 14 29 29 H 1.09002 * 110.31391 * 281.86936 * 19 13 12 30 30 H 1.09003 * 110.31070 * 44.04795 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3669 -2.8293 -0.0072 12 6 6.2780 -1.7725 -0.0078 13 6 7.6270 -2.0823 -0.0136 14 6 7.9980 -3.4187 -0.0191 15 7 7.0659 -4.3543 -0.0174 16 7 5.8138 -4.0767 -0.0074 17 6 9.5075 -3.5238 -0.0254 18 6 10.0132 -2.1337 0.4157 19 6 8.8564 -1.2057 -0.0153 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8745 -0.6800 -0.8911 23 1 3.3695 -3.3126 -0.0010 24 1 5.9416 -0.7463 -0.0042 25 1 9.8362 -4.2870 0.6801 26 1 9.8660 -3.7558 -1.0283 27 1 10.1564 -2.0985 1.4957 28 1 10.9355 -1.8742 -0.1042 29 1 9.0389 -0.8118 -1.0151 30 1 8.7405 -0.3900 0.6984 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260119295.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = 49.958531 kcal Electronic energy + Delta-G solvation = -14049.387038 eV Core-core repulsion = 11651.522861 eV Total energy + Delta-G solvation = -2397.864177 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86132 -37.18650 -35.59653 -32.85939 -31.45459 -30.06243 -28.25851 -26.61584 -24.28000 -22.40619 -21.10475 -20.86445 -18.12643 -16.86053 -16.06482 -15.58732 -15.22341 -14.74809 -14.38353 -13.62509 -13.48883 -13.16959 -12.91337 -12.69502 -12.45085 -12.05878 -11.36576 -11.32043 -11.13046 -11.01991 -10.59238 -10.17019 -10.04008 -9.63548 -9.36023 -9.08493 -8.83680 -7.32800 -6.32248 -4.35845 1.23835 1.62399 3.12393 3.19548 3.20291 3.64330 4.03683 4.18268 4.30977 4.41220 4.82468 4.87681 4.94676 5.00917 5.27357 5.33955 5.56226 5.59007 5.63807 5.79550 5.87891 5.99131 6.10051 6.33190 6.42856 6.57203 6.77320 7.18603 7.58827 8.17713 8.34319 8.69264 9.24093 9.35816 10.79988 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.045275 B = 0.006809 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.293877 B = 4111.133613 C = 4691.460553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.224 3.776 10 N -0.683 5.683 11 C 0.350 3.650 12 C -0.177 4.177 13 C -0.062 4.062 14 C -0.023 4.023 15 N -0.195 5.195 16 N -0.320 5.320 17 C -0.052 4.052 18 C -0.118 4.118 19 C -0.082 4.082 20 H 0.269 0.731 21 H 0.023 0.977 22 H 0.018 0.982 23 H 0.408 0.592 24 H 0.142 0.858 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.136 -0.089 0.106 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.101 0.899 9 C 0.101 3.899 10 N -0.312 5.312 11 C 0.106 3.894 12 C -0.211 4.211 13 C -0.072 4.072 14 C -0.174 4.174 15 N -0.037 5.037 16 N -0.174 5.174 17 C -0.091 4.091 18 C -0.156 4.156 19 C -0.119 4.119 20 H 0.079 0.921 21 H 0.041 0.959 22 H 0.036 0.964 23 H 0.245 0.755 24 H 0.160 0.840 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.422 -1.336 0.113 17.474 hybrid contribution 0.162 2.258 -0.039 2.264 sum 17.584 0.922 0.074 17.608 Atomic orbital electron populations 1.69868 1.06202 1.27542 1.48758 1.24799 0.94822 0.99039 0.93891 0.86826 0.80379 0.83466 0.78946 1.19739 1.20618 1.18874 1.20994 0.88062 0.95532 1.53658 0.89927 1.19655 0.96332 0.77959 0.95983 1.44985 1.00564 1.10575 1.75028 1.20214 0.87807 0.91181 0.90166 1.21282 0.91584 1.00597 1.07637 1.21294 0.94311 0.96696 0.94939 1.22969 0.97541 0.91028 1.05868 1.72195 0.94844 1.30554 1.06088 1.73061 1.06491 1.16323 1.21502 1.20701 0.87894 0.98008 1.02498 1.22328 0.97583 0.93971 1.01740 1.21006 0.90724 0.97471 1.02736 0.92059 0.95921 0.96387 0.75547 0.84044 0.90133 0.89943 0.90711 0.90026 0.89372 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 19.97 27.47 -169.99 -4.67 15.30 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 7 C -0.54 -14.61 9.83 -34.44 -0.34 -14.95 16 8 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16 9 C 0.22 5.10 3.75 -5.19 -0.02 5.08 16 10 N -0.68 -14.45 5.72 -61.45 -0.35 -14.80 16 11 C 0.35 7.03 7.76 -154.74 -1.20 5.83 16 12 C -0.18 -3.13 9.42 -39.04 -0.37 -3.50 16 13 C -0.06 -0.94 6.20 -104.25 -0.65 -1.58 16 14 C -0.02 -0.36 7.42 -82.02 -0.61 -0.96 16 15 N -0.20 -3.71 11.49 33.79 0.39 -3.33 16 16 N -0.32 -6.59 11.52 31.24 0.36 -6.23 16 17 C -0.05 -0.56 6.76 -26.86 -0.18 -0.74 16 18 C -0.12 -1.00 7.08 -25.26 -0.18 -1.18 16 19 C -0.08 -0.85 6.76 -26.99 -0.18 -1.03 16 20 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 21 H 0.02 0.52 7.03 -51.93 -0.37 0.16 16 22 H 0.02 0.41 7.39 -51.93 -0.38 0.03 16 23 H 0.41 8.52 8.45 -40.82 -0.34 8.17 16 24 H 0.14 2.38 6.86 -52.49 -0.36 2.02 16 25 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 256.11 15.07 3.86 3.86 Total: -1.00 -30.12 256.11 -7.03 -37.15 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.57 Total: 4.07 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -3.82 Total: -10.98 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 1.17 Total: -49.40 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.12 -7.03 -37.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260119295.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.107 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds