Wall clock time and date at job start Mon Mar 30 2020 02:45:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86798 * 120.00049 * 2 1
4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1
5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1
6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1
7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1
9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1
10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2
11 11 C 1.39050 * 119.99687 * 179.72505 * 10 9 7
12 12 C 1.39528 * 120.23641 * 0.27747 * 11 10 9
13 13 C 1.38412 * 117.83099 * 179.97438 * 12 11 10
14 14 C 1.38694 * 118.45011 * 0.02562 * 13 12 11
15 15 N 1.32070 * 119.59056 * 359.93999 * 14 13 12
16 16 N 1.28257 * 122.38872 * 359.81682 * 15 14 13
17 17 C 1.51321 * 109.50117 * 179.97438 * 14 13 12
18 18 C 1.54364 * 105.24950 * 17.14548 * 17 14 13
19 19 C 1.50993 * 131.57769 * 180.02562 * 13 12 11
20 20 H 0.97000 * 119.99789 * 359.97438 * 1 2 3
21 21 H 1.09004 * 109.47210 * 60.00161 * 9 7 2
22 22 H 1.08994 * 109.47121 * 300.00131 * 9 7 2
23 23 H 0.97001 * 120.00384 * 0.02562 * 10 9 7
24 24 H 1.08000 * 121.08595 * 359.95509 * 12 11 10
25 25 H 1.09008 * 110.28721 * 136.08829 * 17 14 13
26 26 H 1.09000 * 110.28853 * 258.19584 * 17 14 13
27 27 H 1.09003 * 110.81072 * 91.98308 * 18 17 14
28 28 H 1.09003 * 110.80622 * 215.29753 * 18 17 14
29 29 H 1.09002 * 110.31391 * 281.86936 * 19 13 12
30 30 H 1.09003 * 110.31070 * 44.04795 * 19 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4965 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.6999
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5116 -1.1941 -0.0011
10 7 3.9998 -2.5753 -0.0010
11 6 5.3669 -2.8293 -0.0072
12 6 6.2780 -1.7725 -0.0078
13 6 7.6270 -2.0823 -0.0136
14 6 7.9980 -3.4187 -0.0191
15 7 7.0659 -4.3543 -0.0174
16 7 5.8138 -4.0767 -0.0074
17 6 9.5075 -3.5238 -0.0254
18 6 10.0132 -2.1337 0.4157
19 6 8.8564 -1.2057 -0.0153
20 1 -0.4850 0.8401 0.0004
21 1 3.8752 -0.6804 0.8889
22 1 3.8745 -0.6800 -0.8911
23 1 3.3695 -3.3126 -0.0010
24 1 5.9416 -0.7463 -0.0042
25 1 9.8362 -4.2870 0.6801
26 1 9.8660 -3.7558 -1.0283
27 1 10.1564 -2.0985 1.4957
28 1 10.9355 -1.8742 -0.1042
29 1 9.0389 -0.8118 -1.0151
30 1 8.7405 -0.3900 0.6984
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260119295.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:06
Heat of formation + Delta-G solvation = 49.958531 kcal
Electronic energy + Delta-G solvation = -14049.387038 eV
Core-core repulsion = 11651.522861 eV
Total energy + Delta-G solvation = -2397.864177 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 219.107 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.86132 -37.18650 -35.59653 -32.85939 -31.45459 -30.06243 -28.25851 -26.61584
-24.28000 -22.40619 -21.10475 -20.86445 -18.12643 -16.86053 -16.06482 -15.58732
-15.22341 -14.74809 -14.38353 -13.62509 -13.48883 -13.16959 -12.91337 -12.69502
-12.45085 -12.05878 -11.36576 -11.32043 -11.13046 -11.01991 -10.59238 -10.17019
-10.04008 -9.63548 -9.36023 -9.08493 -8.83680 -7.32800 -6.32248 -4.35845
1.23835 1.62399 3.12393 3.19548 3.20291 3.64330 4.03683 4.18268
4.30977 4.41220 4.82468 4.87681 4.94676 5.00917 5.27357 5.33955
5.56226 5.59007 5.63807 5.79550 5.87891 5.99131 6.10051 6.33190
6.42856 6.57203 6.77320 7.18603 7.58827 8.17713 8.34319 8.69264
9.24093 9.35816 10.79988
Molecular weight = 219.11amu
Principal moments of inertia in cm(-1)
A = 0.045275 B = 0.006809 C = 0.005967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.293877 B = 4111.133613 C = 4691.460553
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.887 5.887
2 C 0.079 3.921
3 Si 0.878 3.122
4 H -0.272 1.272
5 H -0.281 1.281
6 H -0.264 1.264
7 C -0.545 4.545
8 H 0.083 0.917
9 C 0.224 3.776
10 N -0.683 5.683
11 C 0.350 3.650
12 C -0.177 4.177
13 C -0.062 4.062
14 C -0.023 4.023
15 N -0.195 5.195
16 N -0.320 5.320
17 C -0.052 4.052
18 C -0.118 4.118
19 C -0.082 4.082
20 H 0.269 0.731
21 H 0.023 0.977
22 H 0.018 0.982
23 H 0.408 0.592
24 H 0.142 0.858
25 H 0.080 0.920
26 H 0.082 0.918
27 H 0.074 0.926
28 H 0.081 0.919
29 H 0.088 0.912
30 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.136 -0.089 0.106 18.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.524 5.524
2 C -0.126 4.126
3 Si 0.704 3.296
4 H -0.197 1.197
5 H -0.206 1.206
6 H -0.189 1.189
7 C -0.582 4.582
8 H 0.101 0.899
9 C 0.101 3.899
10 N -0.312 5.312
11 C 0.106 3.894
12 C -0.211 4.211
13 C -0.072 4.072
14 C -0.174 4.174
15 N -0.037 5.037
16 N -0.174 5.174
17 C -0.091 4.091
18 C -0.156 4.156
19 C -0.119 4.119
20 H 0.079 0.921
21 H 0.041 0.959
22 H 0.036 0.964
23 H 0.245 0.755
24 H 0.160 0.840
25 H 0.099 0.901
26 H 0.101 0.899
27 H 0.093 0.907
28 H 0.100 0.900
29 H 0.106 0.894
30 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 17.422 -1.336 0.113 17.474
hybrid contribution 0.162 2.258 -0.039 2.264
sum 17.584 0.922 0.074 17.608
Atomic orbital electron populations
1.69868 1.06202 1.27542 1.48758 1.24799 0.94822 0.99039 0.93891
0.86826 0.80379 0.83466 0.78946 1.19739 1.20618 1.18874 1.20994
0.88062 0.95532 1.53658 0.89927 1.19655 0.96332 0.77959 0.95983
1.44985 1.00564 1.10575 1.75028 1.20214 0.87807 0.91181 0.90166
1.21282 0.91584 1.00597 1.07637 1.21294 0.94311 0.96696 0.94939
1.22969 0.97541 0.91028 1.05868 1.72195 0.94844 1.30554 1.06088
1.73061 1.06491 1.16323 1.21502 1.20701 0.87894 0.98008 1.02498
1.22328 0.97583 0.93971 1.01740 1.21006 0.90724 0.97471 1.02736
0.92059 0.95921 0.96387 0.75547 0.84044 0.90133 0.89943 0.90711
0.90026 0.89372 0.89999
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16
2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16
3 Si 0.88 19.97 27.47 -169.99 -4.67 15.30 16
4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16
5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
6 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16
7 C -0.54 -14.61 9.83 -34.44 -0.34 -14.95 16
8 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16
9 C 0.22 5.10 3.75 -5.19 -0.02 5.08 16
10 N -0.68 -14.45 5.72 -61.45 -0.35 -14.80 16
11 C 0.35 7.03 7.76 -154.74 -1.20 5.83 16
12 C -0.18 -3.13 9.42 -39.04 -0.37 -3.50 16
13 C -0.06 -0.94 6.20 -104.25 -0.65 -1.58 16
14 C -0.02 -0.36 7.42 -82.02 -0.61 -0.96 16
15 N -0.20 -3.71 11.49 33.79 0.39 -3.33 16
16 N -0.32 -6.59 11.52 31.24 0.36 -6.23 16
17 C -0.05 -0.56 6.76 -26.86 -0.18 -0.74 16
18 C -0.12 -1.00 7.08 -25.26 -0.18 -1.18 16
19 C -0.08 -0.85 6.76 -26.99 -0.18 -1.03 16
20 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16
21 H 0.02 0.52 7.03 -51.93 -0.37 0.16 16
22 H 0.02 0.41 7.39 -51.93 -0.38 0.03 16
23 H 0.41 8.52 8.45 -40.82 -0.34 8.17 16
24 H 0.14 2.38 6.86 -52.49 -0.36 2.02 16
25 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16
26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
LS Contribution 256.11 15.07 3.86 3.86
Total: -1.00 -30.12 256.11 -7.03 -37.15
By element:
Atomic # 1 Polarization: 7.64 SS G_CDS: -3.57 Total: 4.07 kcal
Atomic # 6 Polarization: -7.16 SS G_CDS: -3.82 Total: -10.98 kcal
Atomic # 7 Polarization: -50.57 SS G_CDS: 1.17 Total: -49.40 kcal
Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal
Total LS contribution 3.86 Total: 3.86 kcal
Total: -30.12 -7.03 -37.15 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260119295.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.107 kcal
(2) G-P(sol) polarization free energy of solvation -30.119 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.988 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.959 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds