Wall clock time and date at job start Mon Mar 30 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48506 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47291 * 300.00299 * 3 2 1 6 6 H 1.48502 * 109.47031 * 60.00795 * 3 2 1 7 7 C 1.37878 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00353 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.38407 * 119.99882 * 179.97438 * 10 9 7 12 12 N 1.32506 * 119.22059 * 359.97438 * 11 10 9 13 13 C 1.32261 * 120.74337 * 179.97438 * 12 11 10 14 14 C 1.38622 * 119.19439 * 0.26159 * 13 12 11 15 15 C 1.38589 * 118.55903 * 359.52069 * 14 13 12 16 16 C 1.50698 * 120.40262 * 180.24732 * 15 14 13 17 17 C 1.53004 * 117.49712 * 343.97823 * 16 15 14 18 18 C 1.52995 * 117.49936 * 275.32069 * 16 15 14 19 19 N 1.32293 * 119.19601 * 0.47341 * 15 14 13 20 20 H 0.96995 * 119.99488 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47280 * 59.99580 * 9 7 2 22 22 H 1.09001 * 109.46681 * 300.00197 * 9 7 2 23 23 H 0.97003 * 120.00121 * 359.97438 * 10 9 7 24 24 H 1.08002 * 120.40002 * 179.97438 * 13 12 11 25 25 H 1.07994 * 120.72267 * 179.74630 * 14 13 12 26 26 H 1.09003 * 115.55248 * 129.64183 * 16 15 14 27 27 H 1.08998 * 117.49961 * 0.02562 * 17 16 15 28 28 H 1.09003 * 117.50008 * 145.01908 * 17 16 15 29 29 H 1.08997 * 117.50178 * 214.97819 * 18 16 15 30 30 H 1.08996 * 117.49980 * 359.97316 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7415 -4.9176 0.0000 12 7 0.4356 -5.1419 0.0010 13 6 -0.0384 -6.3767 0.0011 14 6 0.8491 -7.4416 0.0055 15 6 2.2084 -7.1713 -0.0004 16 6 3.2099 -8.2973 -0.0015 17 6 2.7061 -9.6912 0.3785 18 6 3.5906 -8.9055 1.3498 19 7 2.6161 -5.9127 -0.0005 20 1 -0.4849 0.8400 0.0004 21 1 0.6239 -2.5568 -0.8902 22 1 0.6247 -2.5571 0.8897 23 1 3.1566 -3.4355 -0.0009 24 1 -1.1039 -6.5532 0.0023 25 1 0.4892 -8.4598 0.0098 26 1 3.9883 -8.2335 -0.7619 27 1 1.6502 -9.7938 0.6288 28 1 3.1533 -10.5443 -0.1316 29 1 4.6192 -9.2420 1.4784 30 1 3.1170 -8.4908 2.2397 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260213364.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:03 Heat of formation + Delta-G solvation = 74.188829 kcal Electronic energy + Delta-G solvation = -13801.393028 eV Core-core repulsion = 11404.579556 eV Total energy + Delta-G solvation = -2396.813472 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47095 -37.37936 -35.10076 -32.96523 -32.57307 -30.05813 -26.87703 -24.97424 -23.32547 -22.41592 -22.21850 -20.25246 -17.76430 -16.97416 -16.15767 -15.40356 -15.12729 -14.69521 -14.47613 -14.10077 -13.47835 -13.22584 -12.38747 -12.02390 -11.99129 -11.63847 -11.08774 -10.92900 -10.89874 -10.59939 -10.38562 -10.13063 -10.04342 -9.52248 -9.37331 -8.57628 -8.50438 -7.18065 -6.17170 -4.23249 1.63531 1.76250 3.24417 3.31392 3.35087 3.56959 3.85840 4.32613 4.38598 4.49265 4.75342 4.85308 5.02500 5.13474 5.19544 5.42749 5.56001 5.65149 5.73625 5.75473 5.96974 6.00160 6.25934 6.76528 7.25815 7.51970 7.52383 7.69144 7.88996 7.98481 8.53173 8.76537 9.12084 9.42900 10.93063 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.062172 B = 0.005444 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.254303 B = 5141.977152 C = 5508.653861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.263 3.737 10 N -0.673 5.673 11 C 0.567 3.433 12 N -0.564 5.564 13 C 0.194 3.806 14 C -0.319 4.319 15 C 0.245 3.755 16 C -0.106 4.106 17 C -0.171 4.171 18 C -0.161 4.161 19 N -0.581 5.581 20 H 0.265 0.735 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.405 0.595 24 H 0.159 0.841 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 -16.242 0.703 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.142 3.858 10 N -0.304 5.304 11 C 0.210 3.790 12 N -0.288 5.288 13 C 0.024 3.976 14 C -0.346 4.346 15 C 0.095 3.905 16 C -0.125 4.125 17 C -0.208 4.208 18 C -0.198 4.198 19 N -0.306 5.306 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.241 0.759 24 H 0.177 0.823 25 H 0.151 0.849 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.370 -14.849 0.698 15.242 hybrid contribution 0.391 0.166 -0.036 0.426 sum 3.761 -14.682 0.662 15.171 Atomic orbital electron populations 1.69983 1.06061 1.27185 1.49067 1.24917 0.94924 0.99376 0.94653 0.86346 0.79911 0.82850 0.77741 1.19603 1.20766 1.20764 1.21277 0.93458 0.90385 1.53080 0.91809 1.19152 0.87812 0.80946 0.97869 1.45166 1.10817 1.00675 1.73700 1.19603 0.84787 0.87259 0.87377 1.68086 1.14370 1.24054 1.22250 1.22868 1.00110 0.86828 0.87750 1.22081 0.94607 1.01147 1.16778 1.20242 0.91562 0.90217 0.88435 1.20760 1.00260 0.90870 1.00642 1.23081 1.00633 0.93728 1.03363 1.22943 1.00747 1.02884 0.93259 1.67619 1.39308 0.99434 1.24213 0.92514 0.95322 0.95345 0.75885 0.82338 0.84865 0.86084 0.88087 0.88205 0.88233 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 8 H 0.06 1.70 7.60 -52.48 -0.40 1.30 16 9 C 0.26 7.07 5.40 -5.20 -0.03 7.04 16 10 N -0.67 -15.66 5.70 -63.50 -0.36 -16.02 16 11 C 0.57 12.45 8.42 -322.81 -2.72 9.73 16 12 N -0.56 -12.03 9.59 -13.93 -0.13 -12.17 16 13 C 0.19 3.20 11.30 -17.23 -0.19 3.01 16 14 C -0.32 -4.66 9.43 -39.31 -0.37 -5.03 16 15 C 0.25 3.96 6.50 -82.27 -0.53 3.42 16 16 C -0.11 -1.30 6.24 -91.77 -0.57 -1.87 16 17 C -0.17 -1.53 9.83 -26.69 -0.26 -1.79 16 18 C -0.16 -1.64 10.24 -26.70 -0.27 -1.91 16 19 N -0.58 -11.44 10.40 -10.16 -0.11 -11.54 16 20 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 21 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.41 8.81 8.44 -40.82 -0.34 8.46 16 24 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 25 H 0.13 1.47 6.37 -52.49 -0.33 1.14 16 26 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.10 0.85 6.45 -51.93 -0.33 0.52 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 265.99 15.07 4.01 4.01 Total: -1.00 -31.18 265.99 -9.76 -40.94 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.51 Total: 5.05 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -5.37 Total: -1.11 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: 0.14 Total: -65.02 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.18 -9.76 -40.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213364.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.124 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds