Wall clock time and date at job start Mon Mar 30 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48506 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47291 * 300.00299 * 3 2 1 6 6 H 1.48502 * 109.47031 * 60.00795 * 3 2 1 7 7 C 1.37878 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00353 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.38407 * 119.99882 * 179.97438 * 10 9 7 12 12 N 1.32506 * 119.22059 * 359.97438 * 11 10 9 13 13 C 1.32261 * 120.74337 * 179.97438 * 12 11 10 14 14 C 1.38622 * 119.19439 * 0.26159 * 13 12 11 15 15 C 1.38589 * 118.55903 * 359.52069 * 14 13 12 16 16 C 1.50698 * 120.40262 * 180.24732 * 15 14 13 17 17 C 1.53004 * 117.49712 * 343.97823 * 16 15 14 18 18 C 1.52995 * 117.49936 * 275.32069 * 16 15 14 19 19 N 1.32293 * 119.19601 * 0.47341 * 15 14 13 20 20 H 0.96995 * 119.99488 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47280 * 59.99580 * 9 7 2 22 22 H 1.09001 * 109.46681 * 300.00197 * 9 7 2 23 23 H 0.97003 * 120.00121 * 359.97438 * 10 9 7 24 24 H 1.08002 * 120.40002 * 179.97438 * 13 12 11 25 25 H 1.07994 * 120.72267 * 179.74630 * 14 13 12 26 26 H 1.09003 * 115.55248 * 129.64183 * 16 15 14 27 27 H 1.08998 * 117.49961 * 0.02562 * 17 16 15 28 28 H 1.09003 * 117.50008 * 145.01908 * 17 16 15 29 29 H 1.08997 * 117.50178 * 214.97819 * 18 16 15 30 30 H 1.08996 * 117.49980 * 359.97316 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7415 -4.9176 0.0000 12 7 0.4356 -5.1419 0.0010 13 6 -0.0384 -6.3767 0.0011 14 6 0.8491 -7.4416 0.0055 15 6 2.2084 -7.1713 -0.0004 16 6 3.2099 -8.2973 -0.0015 17 6 2.7061 -9.6912 0.3785 18 6 3.5906 -8.9055 1.3498 19 7 2.6161 -5.9127 -0.0005 20 1 -0.4849 0.8400 0.0004 21 1 0.6239 -2.5568 -0.8902 22 1 0.6247 -2.5571 0.8897 23 1 3.1566 -3.4355 -0.0009 24 1 -1.1039 -6.5532 0.0023 25 1 0.4892 -8.4598 0.0098 26 1 3.9883 -8.2335 -0.7619 27 1 1.6502 -9.7938 0.6288 28 1 3.1533 -10.5443 -0.1316 29 1 4.6192 -9.2420 1.4784 30 1 3.1170 -8.4908 2.2397 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260213364.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:03 Heat of formation + Delta-G solvation = 55.172814 kcal Electronic energy + Delta-G solvation = -13802.217625 eV Core-core repulsion = 11404.579556 eV Total energy + Delta-G solvation = -2397.638069 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.87752 -38.41830 -36.81097 -34.71576 -34.24933 -31.61277 -28.83294 -26.28188 -24.87282 -24.08706 -23.08497 -21.54492 -19.49830 -18.31423 -17.91503 -16.78205 -16.64136 -16.33948 -15.86781 -15.28786 -14.99888 -14.72122 -14.30928 -14.08092 -13.06942 -12.82430 -12.80313 -12.38523 -12.23998 -12.17952 -11.67402 -11.55247 -11.45996 -11.32531 -10.87901 -10.58975 -9.95809 -8.86583 -8.31052 -6.46650 0.30380 0.35442 1.41008 1.42083 1.55605 2.10859 2.40158 2.81358 3.02835 3.07446 3.27441 3.65728 3.91014 3.95994 4.19134 4.25611 4.44883 4.56249 4.78035 4.83431 5.04792 5.08764 5.19184 5.28825 5.29827 5.43110 5.60718 5.81417 6.03466 6.30024 6.65510 6.81851 7.23295 7.55787 8.81080 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.062172 B = 0.005444 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.254303 B = 5141.977152 C = 5508.653861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.563 4.563 8 H 0.073 0.927 9 C 0.292 3.708 10 N -0.687 5.687 11 C 0.546 3.454 12 N -0.608 5.608 13 C 0.179 3.821 14 C -0.293 4.293 15 C 0.230 3.770 16 C -0.134 4.134 17 C -0.140 4.140 18 C -0.160 4.160 19 N -0.596 5.596 20 H 0.270 0.730 21 H -0.006 1.006 22 H -0.007 1.007 23 H 0.408 0.592 24 H 0.196 0.804 25 H 0.180 0.820 26 H 0.124 0.876 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 -18.197 0.765 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.601 4.601 8 H 0.091 0.909 9 C 0.169 3.831 10 N -0.320 5.320 11 C 0.189 3.811 12 N -0.332 5.332 13 C 0.013 3.987 14 C -0.319 4.319 15 C 0.083 3.917 16 C -0.153 4.153 17 C -0.177 4.177 18 C -0.198 4.198 19 N -0.321 5.321 20 H 0.079 0.921 21 H 0.012 0.988 22 H 0.011 0.989 23 H 0.245 0.755 24 H 0.213 0.787 25 H 0.197 0.803 26 H 0.141 0.859 27 H 0.130 0.870 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.120 -16.908 0.761 17.420 hybrid contribution 0.104 0.520 -0.044 0.532 sum 4.224 -16.389 0.717 16.940 Atomic orbital electron populations 1.70118 1.07938 1.28526 1.49708 1.25955 0.95832 1.03456 0.93718 0.85142 0.78789 0.77490 0.77978 1.18437 1.20050 1.20038 1.21627 0.94046 0.91055 1.53345 0.90917 1.18483 0.87703 0.82420 0.94472 1.44743 1.10120 1.00847 1.76324 1.19688 0.85588 0.87189 0.88675 1.68053 1.14483 1.26965 1.23740 1.23603 1.02302 0.85844 0.86954 1.22581 0.93645 1.02758 1.12891 1.21086 0.93581 0.89897 0.87171 1.20850 1.00623 0.91469 1.02349 1.23258 1.01165 0.92198 1.01078 1.23038 1.02242 1.02646 0.91897 1.67653 1.39208 1.00516 1.24684 0.92101 0.98846 0.98866 0.75534 0.78734 0.80300 0.85863 0.87046 0.85521 0.86464 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.92 13.29 21.45 0.28 -55.63 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.98 43.69 29.54 68.60 2.03 45.72 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.56 -32.28 9.28 25.60 0.24 -32.05 16 8 H 0.07 3.94 7.60 -2.91 -0.02 3.91 16 9 C 0.29 16.65 5.40 85.63 0.46 17.11 16 10 N -0.69 -33.74 5.70 -354.80 -2.02 -35.76 16 11 C 0.55 24.88 8.42 261.49 2.20 27.08 16 12 N -0.61 -26.72 9.59 -197.98 -1.90 -28.62 16 13 C 0.18 5.72 11.30 84.72 0.96 6.68 16 14 C -0.29 -7.78 9.43 22.45 0.21 -7.57 16 15 C 0.23 7.11 6.50 42.57 0.28 7.39 16 16 C -0.13 -2.93 6.24 -11.54 -0.07 -3.00 16 17 C -0.14 -1.88 9.83 30.62 0.30 -1.58 16 18 C -0.16 -2.81 10.24 30.62 0.31 -2.49 16 19 N -0.60 -23.72 10.40 -186.04 -1.93 -25.66 16 20 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 21 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H 0.41 18.71 8.44 -92.71 -0.78 17.92 16 24 H 0.20 4.50 8.06 -2.91 -0.02 4.48 16 25 H 0.18 3.05 6.37 -2.91 -0.02 3.03 16 26 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.11 1.28 6.45 -2.39 -0.02 1.26 16 28 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -71.06 265.99 2.18 -68.87 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.37 Total: 18.45 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 5.35 Total: 12.63 kcal Atomic # 7 Polarization: -140.10 SS G_CDS: -5.57 Total: -145.67 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -71.06 2.18 -68.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213364.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.046 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds