Wall clock time and date at job start Mon Mar 30 2020 02:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 C 1.38496 * 119.74112 * 34.72817 * 12 2 1 14 14 C 1.37819 * 118.90616 * 179.78240 * 13 12 2 15 15 C 1.39164 * 119.52270 * 0.21454 * 14 13 12 16 16 C 1.39133 * 118.05856 * 0.14264 * 15 14 13 17 17 N 1.31723 * 120.77059 * 359.75422 * 16 15 14 18 18 O 1.35953 * 111.15618 * 180.67397 * 15 14 13 19 19 C 1.43832 * 109.27498 * 341.11723 * 18 15 14 20 20 C 1.51327 * 133.32689 * 179.68491 * 14 13 12 21 21 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 23 23 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 24 24 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 25 25 H 1.08001 * 120.54499 * 359.97438 * 13 12 2 26 26 H 1.07993 * 119.61610 * 179.72498 * 16 15 14 27 27 H 1.08994 * 110.73784 * 269.20921 * 19 18 15 28 28 H 1.08999 * 110.88902 * 145.95637 * 19 18 15 29 29 H 1.08997 * 110.94487 * 313.89391 * 20 14 13 30 30 H 1.09000 * 110.93919 * 77.54683 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 6 1.3297 -1.7923 1.7341 14 6 1.8071 -2.4321 2.8576 15 6 2.9757 -1.9775 3.4612 16 6 3.6188 -0.8797 2.8981 17 7 3.1347 -0.2938 1.8222 18 8 3.2976 -2.7373 4.5417 19 6 2.1344 -3.4644 4.9742 20 6 1.3149 -3.6106 3.6694 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 1.9111 -0.5221 -4.4375 25 1 0.4242 -2.1310 1.2527 26 1 4.5251 -0.5031 3.3487 27 1 1.5775 -2.8945 5.7179 28 1 2.4115 -4.4425 5.3676 29 1 0.2466 -3.5273 3.8690 30 1 1.5435 -4.5513 3.1685 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260253405.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:24 Heat of formation + Delta-G solvation = 6.095830 kcal Electronic energy + Delta-G solvation = -14451.340314 eV Core-core repulsion = 12019.281356 eV Total energy + Delta-G solvation = -2432.058958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.05171 -38.34628 -34.46207 -32.91061 -31.64551 -29.86594 -28.65346 -25.26062 -23.92515 -22.96934 -21.83270 -19.88576 -17.24326 -16.93008 -16.53432 -16.05855 -15.32691 -14.67303 -14.02305 -13.76857 -13.11505 -13.06651 -12.84739 -12.38788 -12.22980 -11.93256 -11.54556 -11.29791 -11.08858 -10.84364 -10.32043 -10.15153 -9.54595 -9.23726 -9.04518 -8.92042 -8.58823 -7.73357 -6.09382 -4.09805 1.64326 1.67076 3.25734 3.37967 3.38673 3.40277 4.26482 4.38793 4.46376 4.59723 4.89017 4.97364 5.10452 5.25055 5.34436 5.56240 5.66561 5.77910 5.82213 6.14971 6.27324 6.29502 6.34537 6.52168 6.62259 6.86152 6.93037 7.34784 7.39298 7.66141 8.46243 8.65225 8.92733 9.50007 11.03526 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.052368 B = 0.007512 C = 0.007387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.548297 B = 3726.453015 C = 3789.731430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 H 0.051 0.949 4 C -0.506 4.506 5 H 0.073 0.927 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.264 1.264 11 H -0.296 1.296 12 C 0.164 3.836 13 C -0.120 4.120 14 C -0.137 4.137 15 C 0.019 3.981 16 C 0.089 3.911 17 N -0.453 5.453 18 O -0.305 6.305 19 C 0.052 3.948 20 C -0.110 4.110 21 H 0.056 0.944 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.265 0.735 25 H 0.138 0.862 26 H 0.153 0.847 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -3.406 14.621 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.034 3.966 3 H 0.068 0.932 4 C -0.544 4.544 5 H 0.091 0.909 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.189 1.189 11 H -0.223 1.223 12 C 0.025 3.975 13 C -0.140 4.140 14 C -0.145 4.145 15 C -0.028 4.028 16 C -0.068 4.068 17 N -0.162 5.162 18 O -0.218 6.218 19 C -0.023 4.023 20 C -0.147 4.147 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.156 0.844 26 H 0.170 0.830 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.915 -2.737 14.222 14.773 hybrid contribution -1.151 -0.195 0.054 1.169 sum -4.066 -2.932 14.276 15.131 Atomic orbital electron populations 1.22251 0.98194 1.01036 0.99145 1.18222 0.91609 0.96962 0.89804 0.93156 1.20753 1.32330 1.13579 0.87762 0.90851 1.24947 0.95746 0.96621 0.95589 1.69882 1.45336 1.40373 0.97944 0.86835 0.80371 0.83767 0.77214 1.20527 1.18883 1.22332 1.21634 0.88716 0.92485 0.94616 1.21302 1.01985 0.96157 0.94551 1.21022 0.97806 0.97773 0.97937 1.20622 0.96964 0.94846 0.90336 1.22006 1.00447 0.90725 0.93659 1.67530 1.12440 1.29553 1.06670 1.86758 1.34131 1.56636 1.44280 1.23788 0.85408 0.96904 0.96240 1.21750 1.01293 0.97192 0.94422 0.92476 0.94802 0.93520 0.92493 0.84414 0.82982 0.90906 0.87885 0.88999 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.09 37.16 0.30 -2.82 16 2 C 0.05 1.29 2.21 -92.92 -0.21 1.08 16 3 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 4 C -0.51 -14.31 9.13 -34.44 -0.31 -14.63 16 5 H 0.07 2.29 7.98 -52.49 -0.42 1.88 16 6 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.89 21.70 24.37 -169.99 -4.14 17.55 16 9 H -0.28 -6.52 6.88 56.52 0.39 -6.13 16 10 H -0.26 -6.20 6.52 56.52 0.37 -5.83 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 12 C 0.16 3.60 5.74 -82.49 -0.47 3.13 16 13 C -0.12 -2.29 9.17 -39.64 -0.36 -2.65 16 14 C -0.14 -2.29 6.34 -104.12 -0.66 -2.95 16 15 C 0.02 0.33 7.09 -38.91 -0.28 0.06 16 16 C 0.09 1.65 11.22 -17.27 -0.19 1.45 16 17 N -0.45 -9.81 10.24 -9.21 -0.09 -9.90 16 18 O -0.30 -4.61 11.10 -19.59 -0.22 -4.83 16 19 C 0.05 0.56 8.01 38.09 0.31 0.86 16 20 C -0.11 -1.30 7.11 -26.64 -0.19 -1.49 16 21 H 0.06 1.12 6.51 -51.93 -0.34 0.78 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 1.02 3.28 -51.93 -0.17 0.85 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.14 2.43 6.33 -52.49 -0.33 2.09 16 26 H 0.15 2.34 8.06 -52.49 -0.42 1.91 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 248.10 15.07 3.74 3.74 Total: -1.00 -31.86 248.10 -5.46 -37.32 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.35 Total: -1.30 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.17 Total: -15.97 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.68 Total: -36.52 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.22 Total: -4.83 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.55 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.86 -5.46 -37.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253405.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.415 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds